Array 1 17240-16907 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTFX01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H50 isolate H50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17239 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 17178 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 17117 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 17056 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16995 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16934 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCTGTAATGATGCGGAGGTTTTCGATAAAGCGGGAATATCTGTGCTTTCTGTTGAGGCGACGAACTGGAATCTGGGTAAAAAAGACGGATACCAGCAACGCGTGAAAAATGCCTCCTTCCCGAACGGTAATAGCTGGCACGACGTACGGCTTGATAATCAACAGCATATTGACAAGGCGCTGCCAGGGCGGATTGAGCGCCGTAGCCGCGATGTAGTGCGGATAATGCTGCCGTTGGTAAAAGAGCTGGCGAAGGCGGAAAAAACGTCCTGATATGCTGGTGAAACGTGTTTATCCCCGCTGGCGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGATACCATCGCTCGCACCTCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACN # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17241-17452 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTFX01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H50 isolate H50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17241 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 17302 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 17363 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 17424 29 89.7 0 A..........................AC | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCTTCAACGATTTATCCGCTCCAGCTCCCTTATGATTTTCGAGCAATACCCTGATCCTTAACGCCATGGCCTTCTCCTGTCTAAAAGCCTCCCCGGGAAAACGCGGCCTTTTTACTTTACAGGTTTGTAGCTGCCATTACTGGTACACAGATTATGATTATGCAACGGCTATCCTTGTTGGCGCGGGGAACACATCTTCATATTGCGTGACGCTGCCGATGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCTGCTGGCGCGGGGAACACTATAATATGAATTAATTTTTGCGCATAACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGATAAACAACCGCATAGCCTCTTTCGTTTCGATTTATCCCTGCTGGCGCGGGGAACACTGCTCAATAACGTCGTAAATAGCGTAAGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACN # Right flank : CGTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 124738-123855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTFX01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H50 isolate H50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124737 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 124676 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 124615 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 124554 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 124493 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 124432 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 124371 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 124310 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124249 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124188 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124127 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124066 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124005 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 123944 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 123883 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : NATGGTGCATCCGGGAGGATTACTCGCCCTTCGGGCCGTTGCTGACGCAACGTTATCCTTCCTGGTGCCAGCGGTGATTACCGCTATCTTATCCGTATCTTCATCACTGAAAGTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGAAAACTTGCTTTACTGCCGATATTGATACCGCGGTGAAAGCCGTATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCAAATGGCGGTGAGGCGGGGATTCGAACCCCGGATGCAGCTTTTGACCGCATACTCCCTTAGCAGGGGAGCGCCTTCAGCCTCTCGGCCACCTCACCACACGCCTCTTACGAGTGCTTCGAAGAACTTGTTCTGCTCATCGTCGCTGCGTGGCGCACATAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //