Array 1 17089-19217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFF010000030.1 Vibrio cholerae strain Vc515 NODE_30_length_19266_cov_121.266455, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17089 28 100.0 32 ............................ TACAGCGCCACTTCCTGATTCTGGCGGTGAAG 17149 28 100.0 32 ............................ AGTATCGAGGTTATATTGTTTATGGTGGCTGT 17209 28 100.0 32 ............................ AAGTCGAGACGAACTAAGCGAGTAATGCCAAG 17269 28 100.0 32 ............................ TGCCGCCTCTTTTGCGGGTATCTGCCCTTTCG 17329 28 100.0 32 ............................ AAGTATGCAGAGAAATGTTTTTATGAGGGAGC 17389 28 96.4 32 A........................... GACCTCGAACACTTCAAAGCTTACGGTTGCCG 17449 28 100.0 32 ............................ AAGAATGGTAATAAAGGGGCAGATTGTTAAGC 17509 28 100.0 32 ............................ TATTCCGGCCATTTCAACCGGAAACTTGACTG 17569 28 100.0 32 ............................ ACTTTGAGCCCGAGCAAAGCTTTGCAACTGCG 17629 28 100.0 32 ............................ TTCTACAATTTCGGCTGTTGTCGCCGTCAAAA 17689 28 100.0 32 ............................ GATAAAACCTAGTACAATATTTGAGCTTTACA 17749 28 100.0 32 ............................ ATTATCTGGCCCTGACGCAGCGCGAGCGATAT 17809 28 100.0 32 ............................ TGAAAAATACAGCGTTGGATTTTTCAGGCGAA 17869 28 100.0 32 ............................ TGTACTGCGGTTTCATCCAGCCCGACCGATTG 17929 28 100.0 32 ............................ TCTGAGTATTCCAGTACGTTTTTGATGTACTC 17989 28 100.0 32 ............................ AGCAGCGACTCGCTCAACTGTTTCCTTTGTTC 18049 28 100.0 32 ............................ TGCTCGACCTGTGTTAATAACTGTCTAAGTGC 18109 28 100.0 32 ............................ GCGATTGCGTCAGGCGTAAGGTTAGTGAAGTT 18169 28 100.0 32 ............................ ACTTGGACAAAAGCAACGACCAAGACTTTATC 18229 28 100.0 32 ............................ AGCTAAGCCAGAGTCGCCCCAGTGCGCTCCAA 18289 28 100.0 32 ............................ GCTTACCACGGCCAAGATTTCAACGCTAAAAC 18349 28 100.0 32 ............................ ACGTTTCTGATGTGGCAATACTTAGCGTAGCA 18409 28 100.0 32 ............................ ATTATGGCTATCAATCAGGGTAAACTTATTAT 18469 28 100.0 32 ............................ ACAAATCAAGGGATGCGGTTAGCGTTTCTGAA 18529 28 100.0 32 ............................ CGTTGGTCGGGGCGCTGCCCGGTACTCAGTGA 18589 28 100.0 32 ............................ GTGGACATCGTACGGCGATGTTGGTGCCCGCG 18649 28 100.0 32 ............................ GCCACCGCCTTTAAGTAACCCGCATCGAGTAG 18709 28 100.0 32 ............................ GCCTAAGTCGTGACGGCATCCGCTTTGCTCGC 18769 28 100.0 32 ............................ TAATTCAGTCTCAGTGATTACGGCCTCGATAA 18829 28 100.0 32 ............................ TGTAACATGCGAAGAGGGCGAGTATCTGAATG 18889 28 100.0 32 ............................ TTACGGCGAAACGCGGTGATCGCATCCTGGCG 18949 28 100.0 33 ............................ ATAATAAGACGGTGCGAGCTCAAGCGGAATTAC 19010 28 100.0 32 ............................ ATACCGCACGCTTTGTACGCCGAGTCGAGCCA 19070 28 100.0 32 ............................ AAAAACAGAACTAAAACTCAACGTGTCGGTAC 19130 28 100.0 32 ............................ ATGCGAAGAGACAGAAAGATTGCCCAGATGAA 19190 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATTGCAGTGGCTCCAAATTTACGAGCACAGTCGTTCACTGCCGCACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-1108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFF010000076.1 Vibrio cholerae strain Vc515 NODE_76_length_1157_cov_140.261111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ ATTGCAGTGGCTCCAAATTTACGAGCACAGTC 61 28 100.0 32 ............................ TACTGACCATTTTCTTTGCTTTGGCTACTCAG 121 28 100.0 32 ............................ AACATGAGCAGCCACGGTGGTTTCAGGATTGA 181 28 100.0 32 ............................ TGACACTTGGCTTCCCGAAGCGGCTCCTGCTC 241 28 100.0 32 ............................ CAGAAGAAAAACGGCAAGTAATCTGTTTACTA 301 28 100.0 32 ............................ CGACCAAAATCCACGAATTGCCCTCTGGCTCT 361 28 100.0 32 ............................ TTCCACAGCCTCCTGATTTGTAGCCTTTTCAA 421 28 100.0 32 ............................ ATTGCCAGCCATTGAGCAAAGAGCACGCTCAC 481 28 100.0 32 ............................ AAGAACTACGTTGAGAGCGTGACAGGCCGTGT 541 28 100.0 32 ............................ TCTTGCATGACCTTAGCCTTAACGTGATCTGC 601 28 100.0 32 ............................ TTGGAGCTCGAACAACACTGTGGGTGCCCGCG 661 28 100.0 32 ............................ GCATCGACGTGCTTAATATCCTCTTGCATGAC 721 28 100.0 32 ............................ ATTTGAGTAAGCGGCATGAAAACCGCCAACTA 781 28 100.0 32 ............................ GTAAACTGAAGCACATGCAGCGAATACCAAAC 841 28 100.0 32 ............................ AAACCAACCAATTCAGGAGTGATTTGATTAGT 901 28 100.0 32 ............................ AGTATAAGAAAAAGAACTGGAGCTGAATAAAA 961 28 100.0 32 ............................ AATAAGACGCTTGAAAACATCGAGAAAACACT 1021 28 100.0 32 ............................ ATAGGCACAAAAAAACCGCCAATCGGCGGTTA 1081 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : TTAATTGAGTCTGAGGTGAAACAAATGATTTAGTTCACTGCCGCACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-1758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFF010000021.1 Vibrio cholerae strain Vc515 NODE_21_length_53818_cov_116.015649, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50 28 96.4 32 ...........C................ GTCTCGTCATGGTCAGTTTGAGTCAACTCTCT 110 28 96.4 32 ...........C................ TGCACCCTTACGAGCACCACCATGAGAATGAT 170 28 96.4 32 ...........C................ ATTTTACACTAGCCATAGAATGTACCCGTTTC 230 28 96.4 32 ...........C................ ATTGACGCTAAGGGCATCCGTAGAACTGCAAA 290 28 96.4 32 ...........C................ GGCTGCATAAGGTGGCTGTCCCTCTTGTAAAC 350 28 96.4 32 ...........C................ TAGCGAGGGGGTTGAGTGGCGTAAGCGTATCG 410 28 96.4 32 ...........C................ GCCCAAATCCAAAGCCAGAAGCATTAGAAGAA 470 28 96.4 32 ...........C................ GCTTCTTGCTCGCGAGTGCTGAATTCTTCCTC 530 28 100.0 32 ............................ ACCAAGCCCGAACCGCGAGATCGATTTCATTC 590 28 100.0 32 ............................ CCTCAGTGTAAGTGCATTCAGTACCGGTATAT 650 28 100.0 33 ............................ TCATTGATGAAGCTCAAGATTATTTTCCTCCTC 711 28 100.0 32 ............................ AGATAAGAACCGCAATAGCTCATCAAGATCTA 771 28 100.0 32 ............................ AGACAAGGCCAGTGTTTGCGAGGTTCTGCTCA 831 28 100.0 32 ............................ CAGCCGCCGCTAACGCCTCTTGCGCGTGTTTT 891 28 100.0 32 ............................ TTTCTAATCTCTCAACGTACACGCCATTAGGG 951 28 100.0 32 ............................ AAGCGTATCGCGCAAGGGCTTATCATGCTCAC 1011 28 100.0 32 ............................ TGCCATTTGCGCTTTAAGCTTTGCGATGTCGT 1071 28 100.0 32 ............................ TTGCTCAATTTGAATGCGCTGGAATGGCGCGC 1131 28 100.0 32 ............................ TAGACCAACGCGTGGCCGTGGCGGTAGAGAAA 1191 28 100.0 32 ............................ TAGCACATCTTCAGTCAGTGCATGGCTATCGC 1251 28 100.0 32 ............................ CTAAGTGCGGAAGCTCTGGCGCGGTGCTGCAC 1311 28 100.0 32 ............................ TTACATGACTACTTTCGGTCACGCGACAGTAA 1371 28 96.4 32 ...........C................ TAGCGGATAGCGAGTGTGAAACCAGATTTCGC 1431 28 96.4 32 ...........C................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 1491 28 92.9 32 ........T..C................ AATACATGTTTGGCATCGCTAACCAGCTTTAT 1551 28 96.4 32 ...........C................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 1611 28 100.0 32 ............................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 1671 28 100.0 32 ............................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 1731 28 89.3 0 ..........A..............TT. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACAGGCAGCTTAGAAATTAATTGAGTCTGAGGTGAAACAAATGATTTAG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //