Array 1 12147-11462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALME010000064.1 Clostridium perfringens strain CP-35 64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 12146 30 100.0 34 .............................. TAATCAGGATAGTGAGTTATTCTACATGATATTT 12082 30 100.0 35 .............................. AAATATCTTTTAACTTCTTTAAAATAAGCTTCTTT 12017 30 100.0 36 .............................. AATAATCTATCTATATAAACTTGTCTAAAATCTATT 11951 30 100.0 36 .............................. TTAGAATCTTCTATTAGATCTAGTAATAAAAAGTCC 11885 30 96.7 36 ........T..................... GAATTTTTATTGGCATTTTCTCTAGTTTGTTGATTT 11819 30 96.7 36 ........T..................... TTTACTGCGTTTGTTATTTGAGCACTAGACAATTTA 11753 30 96.7 36 ........T..................... GTTCCACAACAATTGCAGATACTTTCTTTACTACAA 11687 29 93.3 36 ........T....-................ AACATAGCAACTGGAGTTATTACGCCTGTTCTTCCA 11622 30 90.0 36 ........A.......AG............ GATTGTCCTGAAACAAGTCCTTTTAATTCTTGTACA 11556 30 96.7 35 ........A..................... GTATTAGCACCATTACTAAATGTTTCAAATATGGA 11491 30 76.7 0 A.......A......TC...T..C....C. | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 95.2 36 GTTGAACACTAACATAGAATGTATTTAAAC # Left flank : GCAGATAATTTCGATAAATTACTATTAGAAAAAGTTGAACAATAACATGAGATGTATTTAAATTTATGAGCATATTTTTAGTTAATACCTGTCTTCCAATAGTGAACAGTATTAATAGTAGCTTAAATATTATTAGAATTTAAGTGATCTAGTGTTAATTATTTTACCAGTGAAGAAGAGAGTGAAAATATGATCTAAGTATTGAAATAAGTAAGTTTAAGGGCTGTTTTATTTAAGCACTTTAAAAAATTGAAAAACACTGGTAAAATTATAATGTACCTATTGAAATAACTAGATTTTCGTAAAAAGCTAATAAGTTAAAATGGTTATTTTGCAAT # Right flank : CTAAAGACTACGTAAAAAATATTTTACGTAGTCTTTTATTTTTTTCCTTAACAGAGCTTTTTATCTAAAACTTTCTACATTTAATTTCACTTAAATTTAACCTAAGGTTTGTCCCTCTCTTTTTTTAGATTAATTTTTTATAGAAGATTAGTAAGGTTTCTTGGTAAAATAAAGGATTTAAAGTATTATTTTAACAAAATATGAATTTATGGTAAAATATTATTGCGAATAAAAAATAGAAAGGAAGGTGTCGCACCTTGGGGAGTTTAGTTTTATGGGAGTTAGGTAAAAAACAAACATATATTTTTAATAGTAACAAGCTTAAGGATGCCATAGGAGCTTCACTTATTATTAAGGATTTTTCAGAGGATTATTATAATGATCTTTTAAAGGAAGAAAATTTTATAACAAGAGGTGGAGGAAAAACTATTTATTATTTTGAGAGCAAGGATGAGGGGAGGGAGTTCATTAAAAACTTAAGTTTTCATATTTTAAAGAAC # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACACTAACATAGAATGTATTTAAAC # Alternate repeat : GTTGAACATTAACATAGAATGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 4859-4692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALME010000154.1 Clostridium perfringens strain CP-35 154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4858 36 100.0 30 .................................... GAGTTCTTTGCTCCAAAAATGGAAGTTACG 4792 36 100.0 29 .................................... TTCAGAATATGTAGGTTCAACAAGACATA 4727 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : CTATCTACTATTGAAACAGAAATTACTAT # Right flank : AGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //