Array 1 39318-38190 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEH01000024.1 Escherichia coli strain MOD1-EC6034 MOD1-EC6034_24_length_64812_cov_27.9263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39317 29 100.0 32 ............................. ACACGGCGCAACATGCGACCGCGTGGGCGTCT 39256 29 100.0 32 ............................. GGCAGAAACAGGCCTTTTGTATATACGCAAAA 39195 29 100.0 32 ............................. AGGGGATTTTTGCATTTAAAAAACGTCGGGTA 39134 29 100.0 32 ............................. CCGCCTAAATAATCCGGTTTTCCGTAAATCTG 39073 29 100.0 32 ............................. GAAGAAGCTGTGTTGTTGGGCTATCTCCACGC 39012 29 96.6 32 ............................C GGCACCACGCGTACCCCGATGTTTGTTTTGCC 38951 29 100.0 32 ............................. GCATCGCATTCTGTCTGGTGCGTTTCATTTAA 38890 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 38829 29 100.0 32 ............................. TTGAATACGTCGCGATACCAGTCACTCCAGAA 38768 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 38707 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 38646 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 38585 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 38524 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 38463 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 38402 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 38340 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 38279 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 38218 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 101871-102875 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEH01000016.1 Escherichia coli strain MOD1-EC6034 MOD1-EC6034_16_length_103072_cov_26.4379, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101871 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 101932 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 101993 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 102054 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 102115 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 102176 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 102237 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 102298 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 102359 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 102420 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 102481 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 102542 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 102603 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 102664 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 102725 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 102786 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 102847 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //