Array 1 36719-34954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029538.1 Lacticaseibacillus paracasei strain LC355 plasmid unnamed2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 36718 32 100.0 34 ................................ TTCTTTCTACTCATTACCCGTTTGTACGCAGCTA 36652 32 100.0 35 ................................ TAGTCCTTTCCCCCACACAAGCGGCATCTAGTGCA 36585 32 100.0 36 ................................ TACTTCGAAAACTATCATGATGAGGGATATAACCCG 36517 32 100.0 35 ................................ AATTGCCACATGACGAATTAATTATTGATCAATTA 36450 32 100.0 34 ................................ AAGCCCGAACAGGTGAACCGATTGATTCTCAAAC 36384 32 100.0 36 ................................ ACGTTCAAGTCTAATGACTTCGATGATTTTGCTGAC 36316 32 100.0 35 ................................ CCGATGGCATTGCGTACTCGGTAGCCACGCAGACG 36249 32 100.0 35 ................................ AGACATTACGATCACTATGCGAGTATACGGTCATC 36182 32 100.0 37 ................................ AGTGGGGCGCTGGGACAGTGGCAAATGCTAACAGCCC 36113 32 100.0 33 ................................ GATGAAACCAAGTTTGCGCTACTTACCAATGCT 36048 32 100.0 33 ................................ AGAACGGCGAGTATGAGCGCACGCGCAAAGAGG 35983 32 100.0 36 ................................ ATCACCTGAATACCAGAATAAGTTATTAATCAGCTC 35915 32 100.0 36 ................................ TTTTGATTGCTGATCTGGCGCTGGTGTCACTGGATC 35847 32 100.0 34 ................................ CAAAAAGATTGCCATTGGTTTTTCGCTGTAGGAA 35781 32 100.0 35 ................................ TGGTACAAATGGGCGTACGTTACCTTGACAGACGC 35714 32 100.0 33 ................................ AGACTATGTTCCCCGCTAAAAATACGGATCATG 35649 32 100.0 35 ................................ ACGCTGGCCGACAGCACCAATCCGGCTGATTACAA 35582 32 100.0 34 ................................ AACGATGGCAACAGGACCGTTTGAAGCACAAGCC 35516 32 100.0 33 ................................ ATCTAATCACCTACTATCTGTTTAATCCTTTGT 35451 32 100.0 34 ................................ TGCCATTGATAAGTCCCCCTGTTAGTCCAGAACG 35385 32 100.0 35 ................................ TCCTTTGCCACGGTGTAGCCGTTGACGTAAGCCTC 35318 32 100.0 35 ................................ ACCAGCACAGACGAGCAGACAATTGCCAACGCAGT 35251 32 100.0 33 ................................ ACGATTTCGCCGGTTTCCTCAACGCGCCAGACA 35186 32 100.0 34 ................................ GATGACATCTACATCAGCAAAGAGACTGGCAAGG 35120 32 100.0 33 ................................ AATTTCCGTGCGTTGTTCCGCGCAAATAAGCTG 35055 32 100.0 38 ................................ ACAGCAAACATCGCACCATTCCAATCAGCAATGGGAAG 34985 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 27 32 100.0 35 GTCGCACCTCACGTAGGTGCGTGAATTGAAAT # Left flank : GAAAAATTTAAACCTATCGATTCAAAAACTGTTCCGGTTTTAGTCCAGTGGCCTGAATGTCCTGAAAGTGGTCAACTAGTTGCAGAGGTTGAGGCTAGAAAGGACGACTTCGATCAGATTTCTGCACTAATGAAAAAGGCACAACAATTTGTAGTTCAAGTTTATATGGACGGTAGTCAGAAAACTTTGACTATGGGCAATGTCGTTGCCGACTATATTCCTGAGTTTGGATTGTGGATTGCTCGTGAGGGCTCATATAACGATGAGTTTGGTTTGGATCCAGATGGTGGCTCTAAGTTGGGCTTTGATATGTTATAGGGTAATATATAGTCGGGTGCGAATGTGTAGTTATCATCAAAACGTGGGAGACTCGCACCTTTATTTGGTAATTTAGTGTCCATTTATAATGGATTATGTTCTGATTTGCCTACAGGTATTAGTAAATGCCTTTATTAATTCTGCATGTAGTAGCGTTAGCCGCATTTTTACTATATTTTGCG # Right flank : AGAGTTCTTAGAACCTGTCTAGTATCTTTTAAGAACTATCTTCAGGAAGGCCAATACAACCATTTGAAGACTGCCGTTAAGGGCACGTTCACAGTTTTTCCAAAGTCGCCGACATTTGTCTAGCCAACTCCATGAACGTTCAACGATCCATCGTTGCGGTAACACCGTGAACATATGCAACTCGTTGCGTTTAGCTACCGTCGTCTTAGCATTCAAAATGAGCTTCACCTGATCCGCAAAGTCATTGCCAGTGTAGCCACCATCAACCATGACATGCTGAACCAGCTCTAAATTTTGGCTAGCCAAACTAAACATAGCCAATGCACCTGAACGATCCGATACATTAGCTCGTGTCACGAGAATGGCTTGTGGTAAACCATTAATATCAACCGCCATATGACGCTTAATCCCTGAAATCTTTTTGCCGCCATCGTAGCCACTATTTTTCGTTAAATCAGTGGTTTTAACACTTTGAGCATCAACAATCACAAACGACGTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGTAGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 251999-248496 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029536.1 Lacticaseibacillus paracasei strain LC355 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 251998 36 100.0 30 .................................... GACAATGCGCTATTATCCTTCAGTATCATC 251932 36 100.0 30 .................................... GATTACGCATATATTTACTACACGCGACGT 251866 36 100.0 30 .................................... TATTACCGGTGAAGCCCATGGCCAGCAATG 251800 36 100.0 30 .................................... CAACTAGCTTGCGTGTGGCCGAGGTGTTCG 251734 36 100.0 30 .................................... ATGAAGCAGAACGAACCATTGGCGATTTGC 251668 36 100.0 30 .................................... TAACAATCTCAACAGAAGGTATATACCATC 251602 36 100.0 30 .................................... TGCAGAATTTAACGCCTACGTTAAATCACT 251536 36 100.0 30 .................................... GGCCAAGGGGGAAATGAAAGCCAGCATTAT 251470 36 100.0 30 .................................... CACCTTTGTAACGCTCGCCGCTAGGCGTCC 251404 36 100.0 30 .................................... TGCAAACCGGCCGTGGCCGGTGAAGCCATT 251338 36 100.0 30 .................................... GCGAGGTCAACGACAGCCTCCGCAGCAGTT 251272 36 100.0 30 .................................... CATTAGGCGTAAAATGGATTGCTGAAACGG 251206 36 100.0 30 .................................... AAATCATCAAGCGAGGGGTTATTTATATGC 251140 36 100.0 30 .................................... CACAAAGGTTGCAACTGCAAAACGTATCAC 251074 36 100.0 30 .................................... GGGTCACACTTACACCGAGTTTCATGATGT 251008 36 100.0 30 .................................... AACCACTCGCGTTTTTTCGCCGTTTCCATA 250942 36 100.0 30 .................................... CCTTGCAAGTCTTTTCAGATGGCGCCTATG 250876 36 100.0 30 .................................... CAACAAAGTTGTATGGTGAAGGCGTTCACA 250810 36 100.0 30 .................................... ATGGTTGCATTAAACTGGAGGTGTTTCACG 250744 36 100.0 30 .................................... AATTATGGAAACTAATGTGAAGCATACAAC 250678 36 100.0 30 .................................... AGTCGGCAGCGGCAGCAAAGTCATTGATTG 250612 36 100.0 30 .................................... GGTTGACGCGCTGAAACAATCATGTTATAC 250546 36 100.0 30 .................................... TGTTCAAAATGATGATGGCTAATGCTGACT 250480 36 100.0 30 .................................... GACCACAATACATTGTTATGCCATAGTAAG 250414 36 100.0 30 .................................... CAGCCGCACAGCAGGCATCAGCATCGTTCG 250348 36 100.0 30 .................................... AGTTTCGGTCATTGCTTCAACCAGTCGCTG 250282 36 100.0 30 .................................... CTGCCGGCGTGTATCGTTTGTAGAGTTCGG 250216 36 100.0 30 .................................... AAAGAGAAGCGTTCGCGAGATTTTGGTAAC 250150 36 100.0 30 .................................... TTTTTCCGGCGCGGCGCGTTGCCTTATGGC 250084 36 100.0 30 .................................... TCTTCTCATAGGCACTCGCGATAATTGTGT 250018 36 100.0 30 .................................... GGCAGCAAACCCGGTACCATGATCCAGTGC 249952 36 100.0 30 .................................... ATCTATATGGACTGAACGGAGCACCTTTCA 249886 36 100.0 30 .................................... TGGCGAAGAGCAATATCGTGCATTTCAGCG 249820 36 100.0 30 .................................... CATGGTTGACGTAAACAAGCAGCAAGCGGC 249754 36 97.2 30 ...................C................ TCTTCTCATAGGCACTCGCGATAATTGTGT 249688 36 100.0 30 .................................... GCTGAAGTATCTTGGCAGGAGGCATGGCTA 249622 36 100.0 30 .................................... AGGGGATTTAATTGGGCATGTGGTCACTCG 249556 36 97.2 30 ..............................G..... TGATTCGGTGAAAGTAGGTGCTCGCCTTGT 249490 36 100.0 30 .................................... AAGGACGGGCAGAGTTAGGAAAGAAGCCAT 249424 36 100.0 30 .................................... CAGACGAGCTCGGGATCAGCTACAATGCCT 249358 36 100.0 30 .................................... ACGGGGGTGTACATGCCGACTCTGATGCTA 249292 36 100.0 30 .................................... GTGGATCTTGCCGCGAAGTACCCGCGTTCG 249226 36 97.2 30 .............A...................... CGCACACGACAAAGAAACCTCCTAGGATAA 249160 36 100.0 30 .................................... GAATATCAGGCAACGTGATCGTGCCTTTCT 249094 36 100.0 30 .................................... CTTCCGTGCCTTTTCGCTTCCCGGCAATAC 249028 36 97.2 30 ........................G........... TTGCCGTCAATACTGTTCGCCCACGCGGTG 248962 36 100.0 30 .................................... ATAAAAACAATGGCGATTATCAAACTTGAT 248896 36 100.0 30 .................................... AGATGGCCGTTGTAAATGACGACATCACAG 248830 36 100.0 30 .................................... CAGAATACTACATTGGCGAGCGTGAGGACG 248764 36 97.2 30 ..........................A......... ATTTGAGTAACCAGACTCAGATGTGCTTAT 248698 36 100.0 30 .................................... CCAAGGGCAGGTTTTCAACTGCCTTCTGGA 248632 36 97.2 0 ...................C................ - Deletion [248597] 248596 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 248531 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 54 36 99.0 29 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGAAAGCTCGATCAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGTCAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGGTCTCATTGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTTGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : AAGCAGCAGTGATACTAAATTGAAGCTAAACTTGTCAAAAAGTGCCTCATCTTTTTGACAAAATAAGGTGTTTTACTATTTATTGTGTGAATCAAGCCCCGATATTTACAAAGCCGAATCTTTCAGCGGCCAACCTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1665125-1669120 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029536.1 Lacticaseibacillus paracasei strain LC355 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1665125 28 100.0 33 ............................ CGATTATCAACGACGAGAAGCGCTTGAAGATAA 1665186 28 100.0 34 ............................ CTAACCTATATGGTGCGGCTGGTGCTAAAAGCAA 1665248 28 100.0 33 ............................ CACGTCCCGCTTCGTCTCATTGTTCATCGTCAG 1665309 28 100.0 33 ............................ CGCCTCGGCTTGATTGAGCACCTGAGCATACCA 1665370 28 100.0 33 ............................ CCCAACTAACAGAGACTTTTTCATAGTGAATTC 1665431 28 100.0 33 ............................ CGAAGTTACGCCGCCACAAACGCCGAAGCTTGT 1665492 28 100.0 33 ............................ TCAGTCCTTCGTCCAGAATGTCCTGAATCACGC 1665553 28 100.0 33 ............................ TGACCATTATTTCATCTGGCCCCCACATTACTC 1665614 28 100.0 33 ............................ TACCAACCACTTTTAGAATGCTGACAGCCCCCA 1665675 28 100.0 33 ............................ TACCTGCGATATAAGGCGCGTATGCCATGAGGT 1665736 28 100.0 33 ............................ CTGTGTTTCCCATAGCACCCAACCCCCAATCCC 1665797 28 100.0 33 ............................ CGTCATGCAAACAACAAGGGGGACAATATGAAG 1665858 28 100.0 33 ............................ CAACACTTTTGCTCCGAAGGTTGATTCGATCGG 1665919 28 100.0 33 ............................ TGGTGTTATCAATAAATTGATTGCCAACATAGT 1665980 28 100.0 33 ............................ TGACAAGGCCAATACGGCTTAACAAAACATCAA 1666041 28 100.0 33 ............................ CTATACTTTTACTGGTGCAGGCAAAACTTATCC 1666102 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA 1666163 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 1666224 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCCCACCAG 1666285 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 1666346 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 1666407 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 1666468 28 100.0 33 ............................ TTGACCAACCACGTTGATCCGAAAACCCAGGGA 1666529 28 100.0 33 ............................ CTGGTTCAGATGGATAGGTCCCAGCATTAGGCA 1666590 28 100.0 33 ............................ CAAGCTAACCTTTCGCCTAGATCGTCTTGATTT 1666651 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 1666713 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 1666774 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 1666835 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 1666896 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 1666957 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 1667018 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 1667079 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 1667140 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 1667201 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 1667262 28 100.0 33 ............................ AGCACAGACGCCGAAGGGAAGCATCGTTGCTTT 1667323 28 100.0 33 ............................ CAAGCCATGAAAAAAGCCGCTGGCCCGCATGCC 1667384 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 1667445 28 100.0 34 ............................ CCTCTGCCCAGTCACCAATCGTGTATCCAAAAAA 1667507 28 100.0 33 ............................ CAACAACCAACCTTGCCAAACTTGAAAAGCAGG 1667568 28 100.0 33 ............................ TTGCGCCCATGTCTTTGCAAGTTTTGTCATAGC 1667629 28 100.0 33 ............................ TGGTTGTTGACCAGCCTGTGCTTGGCTTAGTGA 1667690 28 100.0 33 ............................ CGGCAACGGCACCTCTAACATCTGTATTACCAA 1667751 28 100.0 33 ............................ TACCAGCATCCTCAGCAGTGAATGTGTCCTCAC 1667812 28 100.0 33 ............................ CAAAAACCCCACAATGTCATCGTTTAACCAGTC 1667873 28 100.0 33 ............................ CGGGTAGTTGAACTGATTGACCGCCAGCAGTGA 1667934 28 100.0 33 ............................ CATCATCGGCAAGCTTGCTGACAAGAACGAAGA 1667995 28 100.0 33 ............................ TGCCTTTTTACGGTTCAATGCGGCCATAGAGCG 1668056 28 100.0 33 ............................ CGGTCCCGCTAAGTTTACGTTCGACAAATGGCG 1668117 28 100.0 33 ............................ CATCTCTTCGAACCCCAAATACAGCGTCATTAC 1668178 28 100.0 33 ............................ TGACAAATAGATATTTGCAACGCTTGGACAAAC 1668239 28 100.0 33 ............................ CCATCGCTTGCGCCAATCGTGATTTAATCGTCG 1668300 28 96.4 33 .................C.......... TTTATTAGAACTAGCTGAAGATGGAACAAATGA 1668361 28 100.0 33 ............................ TCACCAATGGTACGTTCTGCTTCATTCAATCCA 1668422 28 100.0 33 ............................ AACTCGGGGGAAATATAATCGTCACTGGCGTCA 1668483 28 100.0 33 ............................ CAATCAATTCGCCAACCGTTAATTCGCCATTCA 1668544 28 100.0 33 ............................ CGAGCTGCAGGACTACTCACGATGGACGAATTA 1668605 28 100.0 33 ............................ TATGATTGTCGAATAGGAACCGTTACCGTCAAT 1668666 28 100.0 33 ............................ TAACTTTCGTCCTATTTCTGTTCCTTCAGTCAA 1668727 28 100.0 33 ............................ TGAGCTTGTTAAGGACGACCCAGTTACCATCAA 1668788 28 100.0 33 ............................ CAATCTGGTTAACTACACCATCTTGATTGATAT 1668849 28 100.0 33 ............................ CTCAGGCAAGTTATCTGGCAAAAATCCAGATCG 1668910 28 100.0 33 ............................ CGTCTTTGCCGTCTCTTCAGGGGCAGATTACGG 1668971 28 100.0 33 ............................ CAAGCGAGAGAGGGCGAAACAGTGGCAAGAACG 1669032 28 100.0 33 ............................ CTAGGGGGTTAGATAATGCGAGCAATAAGCGTA 1669093 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 66 28 99.9 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CTTTATGAGTATCAGCGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTTCAAAAGGACATCATCTTAGTAGCCGTTGGCTACTATTTCAGATTCAGTCTCAGCTATCGTGACATCGTTGAATTGCTTCGGGATCGGGGTATCACTGTTCATCACACCACGGTCATGCGTTGGGTTCATCACTATGGCCCCATCTTTAAGGCTCTATGGCGTCGGCATCAAACAGCTCACGCTAAAAGTTGGCGAATCGATGAGACCTATATTCGAGTTAAAGGCCGTTGGGCCTATTTGTATCGCGCTATTGACAGTAACGGTTTGACCATGGATTTTGAGCTACGAAAACACCGCGATTATACCGCATCCTATCACTTTTTGAAGCGTCTCTTGACGACCAATGGTCGGCCTGATCGATTAGTCACTGATCAATATCGGGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //