Array 1 101221-102406 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010281.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22513 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101221 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 101282 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 101343 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 101404 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 101465 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 101526 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 101587 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 101648 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 101709 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 101770 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 101831 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 101892 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 101953 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 102014 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 102075 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 102136 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 102197 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 102258 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 102319 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 102379 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119076-120325 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010281.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 22513 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119076 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 119137 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 119198 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 119259 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 119320 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 119381 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 119442 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 119503 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 119564 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 119625 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 119686 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 119747 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 119808 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 119869 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 119930 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 119991 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 120052 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 120113 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 120174 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 120235 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 120296 29 100.0 0 ............................. | A [120323] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //