Array 1 1-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797901.1 Rothia sp. HMSC064D08 Scaffold108, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 33 ............................ GGAAAAGCCACGGTACCGGCTTATCATGCCGCT 62 28 100.0 33 ............................ AGAACCTGACTTCTTGGTGTGGTGCCCGGCGTG 123 28 100.0 33 ............................ CGCCATTGACCGCGTGGCGGAAGAGAACGAACG 184 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTTTTCCCCGCACCTGCGGGGATGAGCC # Left flank : | # Right flank : GGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 217260-216194 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797900.1 Rothia sp. HMSC064D08 Scaffold105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217259 29 100.0 32 ............................. GAGTTTCGCGCCTGCGGCTTCGGCTAGTTTGC 217198 29 100.0 32 ............................. TGTTTCGGCATTTACTTTCCCTTCCTAAACTG 217137 29 100.0 32 ............................. GGCCATAAGAGCGGCTGCCCGGTCAAGAATTG 217076 29 100.0 32 ............................. CTCAGTGGTCGTGATGTCTAGCCCTGGGAATA 217015 29 100.0 32 ............................. AACGTTGGCGGCTCTTGGAGCGTGCTAGGCAC 216954 29 100.0 32 ............................. GTATGCTTGTGCCAGCTCTGCGAGGCGGTATG 216893 29 100.0 32 ............................. TGACGTGTCAGCTTTGGTAATAGACAGGCCCG 216832 29 100.0 32 ............................. CACCACACACCCGGCTTGTTGCCCGTAAGGTG 216771 29 100.0 32 ............................. TACTCTCTAATCCCCTCTATTGAGTTTCTGCA 216710 29 100.0 32 ............................. TACGCGGCTCTCGATAGCAGACCGCCCGCCCG 216649 29 100.0 32 ............................. GATTCGGCTAAGACCGATGAAGAGGCTATCGA 216588 29 100.0 32 ............................. CTTTTTCTTTCTCTGCGGGGTGTAGCGAGCGC 216527 29 96.6 32 A............................ GAGACCTTATATATACCCGCCGGTAGGTAGAC 216466 29 100.0 32 ............................. ACCATGTCTGAAGCAAACCGGATTTACCTCAA 216405 29 100.0 32 ............................. TTGCGCGATTTAGTACAGGAACGAAAGCATGA 216344 29 100.0 32 ............................. GGTACCTTTCCTTTTTCGTCTCGAAGGACTTC 216283 29 100.0 32 ............................. CCCGCCGGATCACATGAAATCTGGTACAAGGT 216222 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 CGGCTCATCCCCGCAGGTGCGGGGAAAAC # Left flank : TGACCTCCGGCTCATCCCCGCAGGTGCGGGGAAAACTTGTTCAAACAGTCAGCGGACGCGCAGGGAAACGGCTCATCCCCGCAGGTGCGGGGAAAACGGGATACGAATGTACTCCCATTCGCCAGGCTGAGGCTCATCCCCGCAGGTGCGGGGAAAACTCGATATGAGCTGCCAGTTTTAGCCGCATGGCCGGCTCATCCCCGCAGGTGCGGGGAAAACCATACGCTGCATTCTGCGTACCATTTTCCTTTAGGCTCATCCCCGCAGGTGCGGGGAAAACTCTTGGATGTCTTCTTTAGGCATATCTTCCTTCGGCTCATCCCCGCAGGTGCGGGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTCATCCCCGCAGGTGCGGGGAAAACGAATCCGAGCGCCGCTCAATGGACGATGAATC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCTCATCCCCGCAGGTGCGGGGAAAACCAGGAAACCGGGCGGTGGGGACAACCTCCACCAGGCTCATCCCCGCAGGTGCGGGGAAAACTTGATACCCTCCCAGACCATCTGCCAGTCGCCCGGCTCATCCCCGCAGGTGCGGGGAAAACGAATTGTTGATACAATATGAAAACCCCCAACGCGGCTCATCCCCGCAGGTGCGGGGAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTCATCCCCGCAGGTGCGGGGAAAACACTTGCTGACATGGAGCTTTATCCCCACATAGCAAGTTTTAGAATTAGTTTGGAGCCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCTCATCCCCGCAGGTGCGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 217419-218910 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797900.1 Rothia sp. HMSC064D08 Scaffold105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 217419 28 96.4 33 N........................... GAAGGAAGATATGCCTAAAGAAGACATCCAAGA 217480 28 100.0 33 ............................ TAAAGGAAAATGGTACGCAGAATGCAGCGTATG 217541 28 100.0 33 ............................ GGCCATGCGGCTAAAACTGGCAGCTCATATCGA 217602 28 100.0 33 ............................ TCAGCCTGGCGAATGGGAGTACATTCGTATCCC 217663 28 100.0 33 ............................ GTTTCCCTGCGCGTCCGCTGACTGTTTGAACAA 217724 28 100.0 33 ............................ GGAGGTCAAATGACCTATCTAACCGCCGACCCG 217785 28 100.0 33 ............................ GAGCTCGCCAAGGGGGCTACCACCCGCACACTG 217846 28 100.0 33 ............................ GACCCGCCTACAGCGCCGCCGCGAACGCATCGA 217907 28 100.0 33 ............................ CGAGTACCGCGATACGAGCTTTCAGTTCTTCGA 217968 28 100.0 33 ............................ GGCATTACCACGCATGGTGCGATCAGCCGCGTT 218029 28 100.0 33 ............................ GTATCGAGGTGCTTAGCATCGACGATATTGAAA 218090 28 96.4 33 .......T.................... GGTAAAGTCCAAGAACATTATCGTCTGTGAAGT 218151 28 100.0 33 ............................ GCGCCGCTCTCTTGATGCGTCACTTTGACGTCG 218212 28 100.0 33 ............................ GGAAGGAATTTCTGTTATGTCCATCGTAAGCGT 218273 28 100.0 33 ............................ TGGGACAAGAGGGAAGATCGTAAGGCTCTTCCT 218334 28 100.0 33 ............................ GAACGGGCTGGTCGCGCCAACGGATTTTATGCT 218395 28 100.0 33 ............................ GGTGACTTCGCCGCGCTCTGTCACCTGACCATC 218456 28 100.0 33 ............................ GAAGGTAAAGCATGGCAGGAGGAATAGAGCTTG 218517 28 100.0 33 ............................ GCATTTGGAGTTTGGGATTCATGTCGCGCGCCT 218578 28 100.0 33 ............................ GCCCTAGAGAAACCTCATGCTCTTTCGCCCATT 218639 28 100.0 33 ............................ GCAGATGTTCGTACCGTTCTGACGAACGTGTTC 218700 28 100.0 33 ............................ GCCTAGGCTTTGGGTGTTAATATCCCAGACCCC 218761 28 100.0 33 ............................ CCCGCTTTGGAAGCACTAGGGCCGCGCCGCGCG 218822 28 92.9 33 A.G......................... GTATTTTCGCCTCCACAGGCGGACTCTATGTTG 218883 28 82.1 0 A......................A.CTT | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.7 33 GTTTTCCCCGCACCTGCGGGGATGAGCC # Left flank : AGCATACGTTTTCCCCGCACCTGCGGGGATGAGCCGGTGCCTAGCACGCTCCAAGAGCCGCCAACGTTGTTTTCCCCGCACCTGCGGGGATGAGCCGTATTCCCAGGGCTAGACATCACGACCACTGAGGTTTTCCCCGCACCTGCGGGGATGAGCCGCAATTCTTGACCGGGCAGCCGCTCTTATGGCCGTTTTCCCCGCACCTGCGGGGATGAGCCGCAGTTTAGGAAGGGAAAGTAAATGCCGAAACAGTTTTCCCCGCACCTGCGGGGATGAGCCGGCAAACTAGCCGAAGCCGCAGGCGCGAAACTCGTTTTCCCCGCACCTGCGGGGATGAGCCGGATTCATCGTCCATTGAGCGGCGCTCGGATTCGTTTTCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTCAACCCTATGAGGAATACTCCATTAAGTCTAGTGACGCATATCATGCTTACTGGAGTTGGTGGGGTATTCCCTTAACTGTATAGTTATATATGTTGTTCGGGCGGGTCCCGAAAAACAGTCCGGCCCCATCGTATAGCGGCCTAGTACTCCGCCCTCTCACGGCGGCAACACCGGTTCAAATCCGGTTGGGGTCACACTAGGAAAAGAGAATTCCCCGGTTCAGGCGAACCGGGGAATTCTCTTTATCTTTATAAATGCCAAGGGGGTCAGGATTTTCTAAAAGGCACGTATATAACCTTTTCAGCAAAACCTAACATGCTCGCGTCGTAATGTGAATAACCAGAAACGGGGGAGCAGCCTACTTATTCTCTCCGCTCGCACTCGCAGACCCTTGCGCACTGGCAGAAGCACCCGCTGCGGCAGGAGCACGGTGCACCATACGCCACGTTCCCTCAAGATAATGAGCCGTCACCTGGCCCGAGACAACACCGCTCGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //