Array 1 278-1303 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACAG010000039.1 Neisseria meningitidis strain N60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 278 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 344 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 410 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 476 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 542 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 608 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 674 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 740 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 806 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 872 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 938 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1004 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 1070 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 1136 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 1202 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 1268 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CATTACCGTGTCCATCATGGTTCCAATGAGTTTGCTCGAGGAAAGCAACATATCAATGGTATTGAATCTTTTTGGAGTTATACTAAGGGGCGTTTGGCTAAATTTCATGGTATTTCCAAAGAGATGTTTTATCTGCATCTCAAAGAAACGGAGTTTAGGTTTAACCACCGGCATGAAGATTTAGGTAAAATATTAATGAAGATGCTTCGAAATAACCCAATTTAATATTTTTGCTTCCTAAGCCCCTAATTTAATACGGCGACCATCTCGTGCCAAGG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 553-253 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACAG010000093.1 Neisseria meningitidis strain N60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 552 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 486 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 420 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 354 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 288 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 99.4 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TAATTTAGGGGCTTAGGAAGCAAAATCATCAAAAAACCTGATAAGCTCCTAATATGAAACTAAAAAATAAGTATCAAAAGTTCAGCAAAATTTCAGAGCAAAAGTTTAGAGAAATAATCCGCTGTTTCGCTCTTGATTTGACCGCTTCCGATACTGCTAAAATGACCGGCATTAGTGTACGCGGTATCAATCCTATTTTCCTGAAAATCAGACACAGGATTGCTGCTCTGTGCGAACAAAGCTCACCACTGTC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //