Array 1 143848-143076 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLQ01000001.1 Campylobacter sp. RM9262 RM9262contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 143847 37 100.0 35 ..................................... AAGAATGTCCTTTATCGACTTTAATTTCGCATGGT 143775 37 100.0 34 ..................................... ATTATCATAGGTGCTGTTTTAATTGCATCTGCTT 143704 37 100.0 36 ..................................... ACATTTGTGATTTGCTCATTTACACTTGTAGCTAAT 143631 37 100.0 39 ..................................... ATAGTAGAAAAATACCACTCTTCAAGCTCTTTAAAATCA 143555 37 100.0 35 ..................................... TCCATATATACAGTATCATCTTGTCCTAAAATACC 143483 37 100.0 36 ..................................... GCCTAAATTCTCTTTTTTATACTCGCTAATTGCCTC 143410 37 100.0 37 ..................................... CTAACGGATAAAGGAGTTGCGGTAGTTCCATCTTTTG 143336 37 100.0 36 ..................................... TAGTTTGAGCCTTTATGCTTTAGCTCTGTAATTCTA 143263 37 100.0 38 ..................................... AAAAGAGCCAAGTTGGGATAATTTAACAAAAGTCTTTA 143188 37 100.0 39 ..................................... ATGGATTTAGTTAAACCAGCCATAACTGCATAATGAGCG 143112 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.8 37 GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Left flank : AAAATCAAACCAAGCCAATACTAAATAAAGGGACTAAAATGCAACTTATAGCCTACTCAAAACTAGCAAGTAAACATTTTAATAAGCCATTTTTTAAGATAATGCTAATTTGCGGTAATAATCTTAAATTTAAGATATTTGATATAAAAAACGATGATTTAGCTCAATTTAATAGCACGATAGATAAGATTAATAAAATGTTAAATCAAGAGTTATTTCCACAAAGTTGCGCTAGTATAGCTGCTTGTATGCAGTGTGAATTTAAAAACTACTGTGATGATAGAGAATAATACCGGGGGTGCCAAAGGCAGTTGCCCCGATCTGTTAACACCTTTAGGTGATTTCAAACGCTAAAGAGTTAATCTGTAGTATAATTTGCATTTGTATTATAACTAAATTTTTCCACAAATTTGCTATTTTTAGCATTTTTTTTCAAAGTGGAAAAATTAATACCTCTAAACCATAGCCAAACGCCCATAAAATAGGCTAAATTTGGCTCA # Right flank : CAAATCTAAACATCTAATCAAATTTAAATATTATCTACTATTATATTAAATTTATTATCAAAATAGATTAGCTAGTTAAAGATATAATTTTATAAATTTATTTTTGCAATAATATTAAAATCCCTCAAGAAGGATAAAATATAGCTCTTTAATCTGCGAATCACTCAAATGAGCAGTCGAAGAAGTACTAAGAAATCGAATAATACTATCTTTATTTAATGCATTTTTGCCAATACAAGCAGGATGAGCGATCAAAAACGCCCTACCTACACCAATCTCATCACCTAGCTTTCCATCACAAATAAAACAACTCATATCTAAATGCAATCGCCCTTCAAACTGCAAAATCATAGCATAAGCCTCAAGCACGACTCTAATAGGATTTTGGCGGTGGAATTTTTTCGCACAATTTTCTAATAAGTTATAATAAAACTCATCACTATCTTCTACATCTCGCAAATGATCAGCTAAAAGACGCATAAAATTTTGCCAAATTAATA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 114433-113605 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLQ01000003.1 Campylobacter sp. RM9262 RM9262contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 114432 36 100.0 30 .................................... TTCATTTAGCTTTAAATCTATTAGAGAATA 114366 36 100.0 31 .................................... TTTATCAATCTTTACATCTTGTAGTAGCTGT 114299 36 100.0 31 .................................... CCAAAAAAGCAAAAATGAAACTAAATAAAGG 114232 36 100.0 29 .................................... CGCAAACGGGCAATTAACAAATAAAAATA 114167 36 100.0 30 .................................... TGAAAATGTATATACATTTGCTGGTCTTGA 114101 36 100.0 30 .................................... TCGTTTTATATTGACAACAGTAAAATTTTA 114035 36 100.0 29 .................................... CAAGCAGAGCAAGAAGCGGAACAATTAGA 113970 36 100.0 30 .................................... AAGCGGTTTTATTAGAGATGGAGAATCAAA 113904 36 100.0 31 .................................... TACAATAAAACAGCTGATGAAGATGAGTCTG 113837 36 100.0 30 .................................... TCAAATTTTGATCAATATTTTTTTCTATTT 113771 36 100.0 30 .................................... TTGGGACACTTGAAATACCATCAAGACCCT 113705 36 100.0 31 .................................... CTGCATATTCACCATATTTTACTTTTTCTAT 113638 34 80.6 0 .......................T--..T....GAT | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 98.5 30 ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Left flank : CGAGATTTTAATGCGTATTATGGTTATGTTTGATTTGCCAGTAGGGAGCAAAAAAGAGCGAAAAGAGGCTGCTAAATTTAGAAATTCTCTTTTAAAATGTGGATTTTTTATGTTGCAATTTTCTGTATATGCTAGAATAGTGCGTGGATATGATAAGGCTGAGGTCATTACTAATAAGATAAAGTCTAAATTGCCTAGCAAAGGAAATGTGCGAATGATTACAATCACTGAAAAGCAGTATGCAAATATGGTAGTATTAAAAGGCGAACCAAAAAACTCTACAGAGAAACTAAGCTTAGAAAAAAGCTTATTTGAATTTTGAATATTTTGCCAGGATATACCTGGCAAATGGTTACGATCTAAAAAGATCTTATTATAAGAATGCCCTTAGTTTTTATATGTTATAAGACCTAAATTATACAGTTTATTGATTTAAAATTTAATTAAGATATTAAAATTTAAATCAAAATACCATAAAATCATATCTATAAGAAGTTTCT # Right flank : TAAAATTCAAATATGGAACACAACTTGCTTAATGCTTATAAAATTAACGCAGGAGCAACAATGCAAAATGGATATTATCAAGCGACTGGTGCGATGGTGACGCAGTTTAACCGCTTAGATATCATCACCAATAATCTTGCTAATGTAAATACTAGCGGATATAAAAAAGATGATGTAGTAATAGCTGATTTTGAAAGAATATTTAAAGAGACAAAAGATACTTTGCCATTAGAAAATCACACTAAAGATGCTGCTAAATTTCTAAATAGAACACTAAATAGGGTTCCTCATATCAATGAAGTTTATACCGATTTTGGAGTAGGAGGCTTAAAGCATACCAATAATCCTTTAGATGTAGCTATTGGCAAAAACGATATATTTTTAGTAGTAGATACTCCAGCTGGTGTGCGACTGACTAAAAATGGCTCTTTAAATTTAGATAATGAGGGTTATTTGGTAACTAAAGAGGGTTATAGAGTTTTGCCTGCAAATTATGAAGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //