Array 1 3699488-3698300 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034589.1 Escherichia coli strain L37 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3699487 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 3699426 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 3699365 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 3699304 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 3699243 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 3699182 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 3699121 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 3699060 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 3698999 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 3698938 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 3698877 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 3698816 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 3698755 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 3698694 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 3698633 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 3698572 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 3698511 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 3698450 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 3698389 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 3698328 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3725420-3723945 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034589.1 Escherichia coli strain L37 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3725419 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 3725358 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 3725297 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 3725236 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 3725175 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 3725114 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 3725053 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 3724992 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 3724931 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 3724870 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 3724809 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 3724748 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [3724722] Deletion [3724708] 3724706 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 3724645 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 3724584 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 3724523 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 3724462 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 3724401 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 3724340 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 3724279 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 3724218 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 3724157 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 3724095 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 3724034 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 3723973 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //