Array 1 976-1730 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWT01000304.1 Staphylococcus gallinarum strain NCTC 12195 NCTC12195_c309, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 976 36 100.0 30 .................................... GGGTTTTTATTATGTCAAAAAACAGCAGTT 1042 36 100.0 30 .................................... GTAATCCAGATAAGTTTAAAGGTCCTAAGG 1108 36 100.0 30 .................................... CCTCCATTACTTAAAAACTATAATCGCGCT 1174 36 100.0 30 .................................... CAAAAGATAGATATAGATTGATTCATCTAA 1240 36 100.0 30 .................................... TCTTCCGTAATTTCTTCCTCGACTTCGACT 1306 36 100.0 30 .................................... AAAAGAAAATCATCGGTATGTATTTAAATA 1372 36 97.2 30 ...................................G TACAAAAGATTGAAGATTACATTAAGTTTA 1438 36 97.2 30 ...................................G GGATTTCTTGAAAGTCTTATTAAACCATTT 1504 36 94.4 30 ..............................A....G TAGAAACAATTAAGCAAAATCTTGAGTGTT 1570 36 97.2 30 ...................................G ACCCACAACATGTAGCGTATGAGTGTTCAA 1636 36 88.9 23 ............................G.A.T..A GTTAGCTTTGACTGAAAAAACAG Deletion [1695] 1695 36 91.7 0 ............................G.A.T... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 97.2 29 GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAC # Left flank : ATTATCAAGCAAAAGAAAAAGCATTTGTTATTTATTTATATCCAGAAGCTGGTCTTAGTATAAAAGAACAAATGAGGTTTAGGAAAGTGCTAAACGACTTACCTATTCCAGTTATTGTTTTAACTGAATCACCATATTTTTTATCTGAAAGTTTTAAAGGACTAAATTATTTTATTGATAATGTTCAAATGATTACCGAATCATTTTTTGAAAATAGCTATTGGAATGCTCCGATTAATTTGGAAAAAGAACAGATTGAAGAAAGGTTGGAATTTTTATTTGTAAAATATTGTTCAGTTTTAGAAGTTAAACCGACTATTTCCAACTATTTGCTTGCAGATATCATTGTTTTTGATGATGTTGATCTTTATATCATTGTTTCATTTTTAAAGCATTGTAATCTAGAGTATCAATTGGATATTGATAAATCAAAAATTTCATTAGCATTATCGACGTATCTATTTCTTTAATTATTATTCAAGTATATAATTGTGCTAGAG # Right flank : CCATTTTCTAGCTTTTTTCTTCGATAATACGGTTTTAAAAGCACCTTGAACATCAACAATTTCCTTGATTGTAAGTTGTTGATGTTCATTTAATAAATTAAATACACCAATTTGTTCTTTAGAAATTGTCAAATCTTCCTTAAGTAGAGAGTTATTGATTGTATCAATTGTTGCAATGAAATAAAAGTTAATAGTTAAGGTAGATATAGATTTTATTATACATTTTTCCCCTCTGTATATACTATGTTTCTCTTGGGTGTACTAAAGTGAAGAAATAGCATGCTATTAGCATATTTGTTTCATTGACTAATTTTCAGATAAAATATATACTATTTTCCAACGGTTAAACTAGTATATATTAGTAAAACTTAATAAAAGGTAATTATATTTGTTTGAAGCATATCAAAAATGATGCGAGTAAAACTTTAGAATTGAGATGAAAAATTACTATGATTAATATGCTCGGGTACAGAGTAAACCATTGGATTATTTCATAAAAT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //