Array 1 300025-300478 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGVK01000001.1 Nocardia farcinica strain NCTC630, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 300025 28 100.0 33 ............................ CGGCGGGTGCCCCGGCCGATCCCTACTCGGCCG 300086 28 100.0 33 ............................ CTACGAGCTGGAGCTATCCGACGAGAACCGGAA 300147 28 100.0 33 ............................ CAGTTGCCGAACGAACTCGGCACGGTCGGCCTT 300208 28 100.0 33 ............................ TCCGCCACCGCACACCCTGAACTACCCCCGCGA 300269 28 100.0 33 ............................ CACGTCGGTGGTGAGGCCGGCGGCGTGGGCGAG 300330 28 100.0 33 ............................ CGAGAGCGGCTCGGGTGTGATCGGAACGAGGAC 300391 28 100.0 33 ............................ CACCACCGTCGCGATCAACACCTCCGGTGAAAC 300452 27 82.1 0 ...T.....-.A..G...........G. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : TTCAGCCCGTTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTTTTTGTTTTTTCTTGGGCCTTGTTCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCGTGTCGCTCGCTAAGGTTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTTGTTGGGGAGGTGAGGAAGCGACTTAAAGTGAATGCAAAAGGCGGACGTTGGCTGAGGAGCTGCAGGTCAGGAAGT # Right flank : CTCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCACTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGTCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCAGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGCAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCGGCCCTGTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 302727-302991 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGVK01000001.1 Nocardia farcinica strain NCTC630, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 302727 28 100.0 33 ............................ CGTGGTGGCGAAGCAGGTCAACGCCCCGTCCCG 302788 28 100.0 33 ............................ CCGACCCCGATGGGAACGTCCGAGCGGCGGCGG 302849 28 100.0 33 ............................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 302910 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC 302964 27 85.7 0 ........A.T....A.....-...... | A [302972] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 32 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GAAGAGCACGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATCCGCAGGTGGCTTGTGTTTCCACGTTCCGAGAGTGCTAGGACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCGAGCGCACTCGACAGAGTGACTGTCCGATCGACATCTCCTGCGATTCTGACAGTGTGGGTCTGGGACAAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACCCATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGGTTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGCAAAACGCACTGAACGGCCGGTCCAGCAGCCGTCTGAAGCAGTCGGAGCGCGCGTCGTAAGGCACGTTGCACCAGCGACCGTGTGGCGAAAGTGGTTCAGCGGCTAGCGTGCTTGGATGCCCAAGGAGTGCCTGCGCCAGCGCGATCGGTGGACGAGATCGCGACTTTGGCAATGTCTCAGCGGCGCATGTCTTAGATGCTGGGTGGGACGGACGAAAGCGGGGAAAAGGCGCGGTACTACCGCATGACAGCCATTGCGCGCTTCCATGACTTGGATGTGGTCCGGGATGAGACGGGAAGTCTGAACACCAACCGCCGGCGATCAACAGCGACCCGACGCGCGGGTAACGACCGATTGTGGCGAGGAGTTTCTCGCTCGTAGCGCGAGGACCTCCCGCCCGAGATTGTGCACCTGCTGGTATTCGGCCAAGTCGGCCATTAGTGGACCATCACAAGCTAAGGGCTGTCCCGTAAGTTGTTGAGCGCCAGCCGTTATCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 304599-305067 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGVK01000001.1 Nocardia farcinica strain NCTC630, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 304599 29 100.0 32 ............................. CGAGGTTCTGTGATGAGCAACCACCGTTCGAC 304660 29 100.0 32 ............................. GACGAGGTGTTGAGCCAGTTCGCTACCTATTT 304721 29 100.0 32 ............................. AGGTCAGGGGAGGTGGGTGGGGGTTGGGTGCA 304782 29 96.6 32 ............................T TCGCCTGCGCTACAGCGACTCTGAGCCGCTGT 304843 29 96.6 32 ....................A........ CACCTCGTTCGGGTTCTGCGGGACGCTCATTC 304904 29 100.0 32 ............................. GCGAAATCGGACTCCAGGAACGGCACCCCCGC 304965 29 96.6 46 .........................C... CCATCTGCTTGTAGGAGGACCATCGTTTCGGTGCGCCGAGCTCGAC 305040 28 72.4 0 A..T....G..A..T..-C........A. | ========== ====== ====== ====== ============================= ============================================== ================== 8 29 95.3 34 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : AGGCCCACAACGCCTCCCATCGCAAGGTCCGTGCTCGTGTCGAGCACACCTTCTCCCGGATGAAGACCTGGAAGATCCTGCGGGACTGCCGTCTACGTGGCAACGGTGTCGCTGTCGCGATGGCCGGAGTCGCCACCCTGGCCAACCTCGCCCACGCCCGCTGACCCCAGCCAGGGGCAGGTCGTCATCGCCGGGTCGGACTTACGGGACAACCCTTAGGCGCTTAGCTTGTTCAGGGGTGGCGTGCACGCGATGCACGTCCAGCTCGCGAGTAGGAACGAGGCTACGACCGTGAACGGGTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTCGGTCGTGGGAACCTGTGCGGAGGCTCACGCGGGACAAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTGGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGGTACGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACGCCGCCGCGCCGCGTGTGCCCCACGCGTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTACCGCTTGCTACCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 314253-315073 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGVK01000001.1 Nocardia farcinica strain NCTC630, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 314253 28 100.0 33 ............................ CCGTTCGGGAACCGCCCGCGACAGCGCGAACAC 314314 28 100.0 33 ............................ CCGGCCTGGTTCGGGCTGTCCACGCCACGTCAA 314375 28 100.0 33 ............................ CAATCCGACTATACACACGCACGCGCAACAGCG 314436 28 100.0 33 ............................ CCGCGGCACGTCCCACATCGTGGCCCGCGACCG 314497 28 100.0 33 ............................ CGGTTTGCCGTGCTGCGCGCGGGCGAAGTCGTG 314558 28 100.0 33 ............................ CGAGTACCTGCGCAAGCACATCGACGCCCAGCA 314619 28 100.0 33 ............................ CGAGGACACCATCGACCTGCCGGAGGCCAAGCG 314680 28 100.0 33 ............................ CGTGGGCGAATTCCTCGCGCCGGTCAAGATCCC 314741 28 100.0 33 ............................ CCGATCTCGTCGGCCGGGAGGCCCGCGCGTATC 314802 28 100.0 33 ............................ CGGATGCGCCTGCTCGGCCGGCTGTACACCAGC 314863 28 100.0 33 ............................ CGGCACCGAAGGGTGGAGCCCCAAGCAGTACAC 314924 28 100.0 33 ............................ CCTTGCCTGCACCCCTGCCCGGCCGGGCGAATC 314985 28 100.0 33 ............................ CGGCCAGCCGAGCAGTGCCGGGTGGCTGTAGAT 315046 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCTCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCTCGGAGGTAGTCACCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGTCATCCACAACGGCGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGACCATCCGCGAGCAAGGATTTCGCGGATGGGCCTGGCGCAGCTCCACGTGCCGAGAATGGGGTGAGACGTTGCGCGCCGACCTGCACCGGCTCGCGGAGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCCACGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCATGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTTGTTCTTCCCGGCCTGGGTGCGGTGTTGTCGGCGCCCGGTCTCCCGGTCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 429881-431065 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGVK01000001.1 Nocardia farcinica strain NCTC630, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 429881 29 100.0 32 ............................. ACCACCAGCGCCGACGGTCGATTCACCCGCGG 429942 29 100.0 32 ............................. CGGCCGCCGCCGAGCTGTCGTTTCTGGACCTC 430003 29 100.0 32 ............................. AACTCGCTGAACAGCTCGAGCGCCCCGACGCT 430064 29 100.0 32 ............................. TCGTCGAGCGACGCGACGTAGTGGTCGGGCAG 430125 29 100.0 32 ............................. TCCAGCACACCCCGTGCTCGCCGCGCTGCCCG 430186 29 96.6 33 ............................A CAGACCCTTCGGGAACGCCTCGTGGAAATCAGG 430248 29 100.0 32 ............................. TCCGATGTCGAGGCCTACGTGCGGATCTCGTC 430309 29 100.0 32 ............................. CACACCCAGGGGAAGCCCCGGACCGTGCCGAG 430370 29 100.0 32 ............................. TCTATGCGGACCGGCCAGTGGCGGAGTGGCAG 430431 29 100.0 32 ............................. TCGCCCTTGATCTTCTGCGCGTCGCGATCTCC 430492 29 100.0 32 ............................. ACCGGCCTGGCCGACGACCTCGACCTGTGGTG 430553 29 100.0 32 ............................. CCCCTCGATCTCGTCGAGGGCGAAGCGCTCGT 430614 29 100.0 32 ............................. ATCGTGACCGGCGCGTGGGATGCCATCAAGGT 430675 29 100.0 32 ............................. ACCGCTGACGGCCCTGACATCGGCGACAGCCC 430736 29 96.6 32 ..............T.............. AGCGGGATCAACGGCGCGACTGCGGTGACCAG 430797 29 93.1 32 ..............T.............G TACTGGGATGAGGTCCAGCGCCGCCAGGTCGA 430858 29 96.6 31 ..............T.............. GCGAACGGGCGCCGCCGTCGTCGGGGAAGCG 430918 28 93.1 32 .....-........T.............. CCGGTACCGCCGCCGCCACCCCCGCCCCCGCC 430978 29 93.1 32 ..............T...........T.. GACGACAACAACCTATGGGTGCTGTGCGGCAG 431039 27 86.2 0 ............--.........A.T... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCGGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTATGCGGAGGCTCACGCGGGACGACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGCGACTTGGTCGCGTTCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAGCCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGGCCCGCGTCCTCGACCCTCGGGTGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGGACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGTGAACCTCCCAGTCGAAGGCCGCGCGGCGCCGCCCCTTCGCATTCCTAGACG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 6054080-6053807 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGVK01000001.1 Nocardia farcinica strain NCTC630, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6054079 29 100.0 32 ............................. TCCTGCGCGCCTGGATGCCCGCCGCCACCGGC 6054018 29 100.0 32 ............................. CGTCCAGGTCGCAGCAACCCCGGCGGCGGGGG 6053957 29 100.0 32 ............................. CCGGCGCCGGACCCCACCGCGACCGCCAGCCC 6053896 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 6053835 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACTTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGACAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCCGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCCGTCGCGCTGTGCGGGGTCGAGTTCATCAGGCCGAACACCGCGTGGGCTCGTACGCGGGCTTCGCCTTCGGGCAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 6061848-6061272 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGVK01000001.1 Nocardia farcinica strain NCTC630, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6061847 29 100.0 32 ............................. AGGTCGCACACGCTGTTCACGAACACCCTGCG 6061786 29 100.0 32 ............................. TCGCCGCCGTCGGGGTCAGGGACCTCGTAGGT 6061725 29 100.0 32 ............................. AGTCCTCGAGGCGGCCCGACCACCGTGCCCCG 6061664 29 100.0 32 ............................. GGCGTCACGGGGAATGTCCTGGTCAGGTCAGC 6061603 29 100.0 32 ............................. CACAAATCGCGCACGCGAGGCACATTGTCGAA 6061542 29 96.6 32 ..............A.............. CCTTGAGGCCGGAGTTCCCGCTCCAGCCTCAA 6061481 29 100.0 32 ............................. CCTGCGGCTGCGGTCAGGTGCGACCCAGCGTG 6061420 29 96.6 32 .................A........... GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 6061359 29 96.6 31 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGAA 6061299 28 79.3 0 ....CT.......GG.A...-........ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCGTGGGTCGTCGACGGACCAGGCACGTGGGGCGTAGTCGGTCTCTCACGCGCCCCTTGGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTACTATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTGCAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACCTCGTCGACTTTGCCGCTGGGCAGTTCCCAGATGCCGCCCATGAAGTCGTTGCCGGGTCGGCGCAGCAGCAGGATGCGGCCGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGGCATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCCGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //