Array 1 107636-111749 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWT01000005.1 Pasteurella multocida strain HND18 Contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107636 28 100.0 32 ............................ TCATCTATTGACTTCTGCCCGACCAACTTTAC 107696 28 100.0 32 ............................ AAAAGAGCCAGGCAAAAATCGCCTGGTTCTTT 107756 28 100.0 32 ............................ AAACTATCAAAATCCTCTGGAATAAGAGTTAT 107816 28 100.0 32 ............................ AAAACCAATTCCTAATTGTCCAGAACGTCCCT 107876 28 100.0 32 ............................ AAGCATCAAGAAAAACTCTGGATTCAGCCAAA 107936 28 100.0 32 ............................ ACTCTCATATTTATATGGTTGTTTTTTATTCT 107996 28 100.0 32 ............................ TGCGAATGGAATCAACACTTCATATCGCAGAG 108056 28 100.0 33 ............................ TAAACAAAGCACCTCCCATGAAAGCCATACTAT 108117 28 100.0 32 ............................ TTTAGTTACTCATCTAGTTACTCATCTAGTTA 108177 28 100.0 33 ............................ AAACGTGACTGATTCGAGTTCCAAAGCGACCTG 108238 28 100.0 32 ............................ ATATAAAGCCCGTCCGTAGGCTTCCTTACCGA 108298 28 100.0 32 ............................ GGCGATGTTAAGTGGTAAACCATTCCGCAATC 108358 28 100.0 33 ............................ TAAAACATTATACAATTAAATTCATGAACACAA 108419 28 100.0 32 ............................ TTTAGAGGGCGTAGGTATCACTGAAATTAGAC 108479 28 100.0 32 ............................ TCTCTTTATGAGAGATTCTATGAGTGAATCTT 108539 28 100.0 32 ............................ ATTAGAGAATCTCCCTTTTTCCAAGCATCACC 108599 28 100.0 32 ............................ ACTTACGCTTAGAGAATACCGCCTATTCTTTA 108659 28 100.0 32 ............................ TTAATGCTATAATCGCCACATAAAATGCAAAA 108719 28 100.0 32 ............................ ACATTATAGCGGTGAGGATATGGCGGACTATA 108779 28 100.0 32 ............................ CCTTTAAGTTGTTCTAGTGATTCCAACACAGT 108839 28 100.0 32 ............................ TGAAGCATTTATGGAATGGTGGTAAGAAAATA 108899 28 100.0 32 ............................ ATTCTAAATTGAGATAGCTTTTCTTTTGAGAT 108959 28 100.0 33 ............................ TGATGCAAATGCTAATCCTAATATTTTTCCATT 109020 28 100.0 32 ............................ TTTTTGTTTGCAAAATTTATGTAGTCATCTTC 109080 28 100.0 32 ............................ TTTAACTGTGGTATTACAGGCAAAACAAAAGG 109140 28 100.0 32 ............................ AATAAGTCAACAATCATGAACGATGACGATAG 109200 28 100.0 32 ............................ AACCGTCTTTCCCAGACAGCATACATTTCTGA 109260 28 100.0 32 ............................ TATCGTTGCGTGTCGTTTTAATTTAATCATAA 109320 28 100.0 32 ............................ ATTCGCAGGCGTCTTGAGATGTTAGTGTCCCT 109380 28 100.0 32 ............................ TTAAAGGTTACTCACGGTACAACTAAGTGAAA 109440 28 100.0 32 ............................ TTCCTGTTGTTCCTCTTGAGTGTATACTTCTA 109500 28 100.0 32 ............................ TTCTGTAATATCAATCATCGACATTAAGCTCC 109560 28 100.0 32 ............................ CTGAGTGGACTTATTTTCAGCCAAACCACCTA 109620 28 100.0 32 ............................ TGAACAAACACATATTACATTAGATTTTCCTA 109680 28 100.0 32 ............................ ACTTCATCTTTGCTAGCTTTCGTTTCTTTTAA 109740 28 100.0 32 ............................ TAAGTAAGAGTCTATTAACCTTAATCCCTCAA 109800 28 100.0 32 ............................ AGTGACAGACACAAAAGGAACAGTATTGAAGA 109860 28 100.0 32 ............................ AGCATGACGGACAGTCTGTGAATCCGTATATG 109920 28 100.0 32 ............................ ATAATGTACTCCTGTTCGTTCCATTATTTCAA 109980 28 100.0 32 ............................ TCATTAGTCATCTTCTTAGAAAGATTAACCAT 110040 28 100.0 32 ............................ ACCTTTATAAGTTGACATTACGAAAACAGCCT 110100 28 100.0 32 ............................ TGTTGCTCCCATAATGGCTACATCACCATTCA 110160 28 100.0 32 ............................ ATCCTCATTGTCAAAATATGGTTTATCACCCT 110220 28 100.0 32 ............................ AAAGCGGTAATCGACCAGATATTTAATGCTAA 110280 28 100.0 32 ............................ TTAGGGGTCAATGATGATGGGCATTTAGATGC 110340 28 100.0 32 ............................ ACAACTGGCACTCAACCAGTCCTCATGTAGGT 110400 28 100.0 32 ............................ AGACATCAGACCATCCTATGTCTTCTTCTTCT 110460 28 100.0 32 ............................ CTACCATGCGTTTAATCAAGACCTCTGTAAGC 110520 28 100.0 32 ............................ AACTTCAATTCAGATGCCAACACCGCCATATT 110580 28 100.0 32 ............................ TATCAGATACTGGCACAATTTCTTTCTCATAA 110640 28 100.0 32 ............................ AAAGCAACTTGTGAACGTCCGTTGTGTGTTGA 110700 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 110760 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 110820 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 110880 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 110940 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 111000 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 111060 28 100.0 33 ............................ TAAACAAAGCACCTCCCATGAAAGCCATACTAT 111121 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 111181 28 100.0 32 ............................ AGAACTTACTGAATTTGATATTAGAAAATCTT 111241 28 100.0 32 ............................ ATTTTTCACAACGCATCTTTTCCATTGCGATG 111301 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 111362 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 111422 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 111482 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 111542 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 111602 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 111662 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 111722 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================= ================== 69 28 99.7 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15635-16202 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWT01000007.1 Pasteurella multocida strain HND18 Contig007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15635 28 100.0 32 ............................ AAGTAGCCTTTTAGTAGTCACTAGATTACTAG 15695 28 100.0 32 ............................ GCTTTTAGCGGACATGGCAAAGTAAGCGTTAC 15755 28 100.0 32 ............................ TTGACTGGAGGGGTCGTGTGTATGCAATTCCT 15815 28 100.0 32 ............................ AATCTCATTAAAGTATTAGACTTATTGAAATA 15875 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 15935 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 15995 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 16055 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 16115 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 16175 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //