Array 1 47207-47461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000001.1 Aulosira sp. FACHB-113 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 47207 37 100.0 35 ..................................... ATAGCTACAGTATTTATTTTCATACAAATAAGCCC 47279 37 97.3 36 ......................A.............. GTCGTACTTGGATTTAAGCCAAACGTTCGTGGGACG 47352 37 100.0 36 ..................................... TGGCTTTCGCTGCTGGATATAACAACTACTTGACTC 47425 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 36 CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Left flank : GTATCTTAGTTAAGCTCTGGAAGTAGAAATTCTCATTTACCAATCTTGACAAAGATAATATTATTCAGCGATAATTAGAAACGCGTATTCCGGGGTTATAGCTCAGTTGGTAGAGCACTTCAATGGCATTGAAGGGGCCAGCGGTTCGAATCCGCTTAACTCCATATGTACATTAAATTATTATTGTCAGTTTTAAAGAATTCTTGTCCATTTTGACGTAGTTAAGGGACATAAGTAACCTATTTTCTTGACTTTCAGCACTCAAACCAGTTTTAAATAATTATTGTCCAGAGTTGAAACCAGTTTTAAATAATTATTGTCCAAAATTAAGTTAAGTTTCTCGCAAGATACATTGACTCTAAATGTATCTAGAGATCTATGGGATCAACTGCACAGGTTTTGGCAATATGCCATTGAAGTGCTCCTTTCAAACCACCCTAATAAATAATTTTACAATAGAAGACATAATAGTGAAATTGCTGAAAACATAGCGATAAAAT # Right flank : CCCCGCACTTGTCAAACTCTTATCCTGACTATTTTCCAGAAGCGATTTTGGCAAGTCTACTTAAAAGCCTATTTTCTATCACTAACAAATAAACTTGCATTCGCATTGAAATGAATGAAATGCAGTCAAGACAATAGTTTTAGCCATTTGGCAGCACTCCAGGGATTTTGCCCCTGCTTTGACTTGCCAAAAATAAAAATTAGGGGGTGGTAGTTCGGTAGCCACCATGACGGTATACCCGTACCCTTACTTTGCTGTAAAGTAAGAGGTAATGATGTACTCATACAACCAAAATCCCAGATTTCAGTCATATAGTCCGCTCTGTCACCTAACACCAAGCAAAAAGAGTTTGATGTCAAGAGCTAAGGTTCTGGGCTGTTTGTCACCCTAACACCTTATACTTCCCATGCGTCTCGGTGCGAGTCCTTTCTCATCTAACAGCAGCATTTGCTTACCCAAGCAATTACTGCTAACAAACGCTTAGATGAACGCACAGGTTG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : NA // Array 1 2054-675 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000080.1 Aulosira sp. FACHB-113 contig80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================ ================== 2053 37 100.0 35 ..................................... AATTAAATTTTTCGCATCAGCCCCAGAAATCAGAT 1981 37 100.0 34 ..................................... ACCCCACCATAAACCACAGCTCCACGAATCAACC 1910 37 100.0 37 ..................................... TAAGCAGGGGATAAGATTCAATCCCGAAACCTATCAC 1836 37 100.0 35 ..................................... TGCTAACATGATAGTCCCATGCGGCATTTCTAAGT 1764 37 100.0 35 ..................................... TAATATTCTTTACCAGAGTGAAATATTAGTTCATC 1692 37 100.0 43 ..................................... GATTCATCCTATCCTCACGGTAACGGGTACACCATTCACACTA 1612 37 100.0 38 ..................................... ATACAAGTCCCAGCATCCTGCAATGATGAACTCATTAC 1537 37 100.0 35 ..................................... ATTAGCTATGAAAGGAATACTGCACGGGTTTGGCA 1465 37 100.0 34 ..................................... GAGGTTGCGCCTGCATACCAAACCACCCTACGGT 1394 37 100.0 39 ..................................... TGTTGGAGGTGGGAGAAAAAAAGCCACAAGTCCAGAGCC 1318 37 100.0 36 ..................................... AATAAAATAGCCCTCACGCGAGGGCTATTGCTTAAA 1245 37 100.0 34 ..................................... CAATCGCCTCATCCTCGACCAAAGTAATATCCAC 1174 37 100.0 31 ..................................... GTACTTTTCTCTGCTTTTCATGTATGTAGTG 1106 37 100.0 36 ..................................... AGTGCAAAGCCCCAAATATTCTCATTGAATCTTGTA 1033 37 100.0 35 ..................................... TTAACTAGAGTGAATCCATCAGGGACGCGATCGCC 961 37 100.0 208 ..................................... AATGTCGCACAAGTTTTTAGCACATTTGTTAAGCTCGACTTTATCCATTCAGACATTCTACTGTAGGGTGTGTTAGGCGCATATTTTCGATATGATTTGCCACGAAATAATTATCCTAGCGCCTAACGCACCATCCATGCGGCGGTGCGTTACGGCTAAATTTTGTTGTCTCTTTGTCCAAAATCCTTTCATAGCCGTAACACACCCT 716 37 81.1 0 .C..A....T..T.....GG..T.............. | T,AAT,G [692,697,710] ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================ ================== 17 37 98.9 47 ATTGCAATTAACATTAATCCCTATTAGGGATTGAAAC # Left flank : AAGGGTTATTGTCATGCTCTTTAAAAGCGTGAATGCCTAGTTGCTGGTCGTTAGAGTTTGCCCTTTCCAATGTATACCAGATAGACTATGACAAAAATTTTATGGCATTGACAATACAAATACAGCTAGTTGCAAGTTGCTAAGGTAAGACTATGCAATTTCAATGCTTAACAGCTTATTGGGTGGAAGTCTTGCTGATTTTTTCGAGTGCGATCGCCTATCAAATGCTCAAAGCGTTTGTTAGAGTTGAAATGCAAAAGATTTTTTAGCTCAATGCGCGGATGGGTGGGTGTAGAAAATCTCTCTGTTGAACAAATGGTTGTATTCCTTATAGGACAGTCTGTTGGAGAAAAATTAAATTAAAACCATGCGCGCACTTTACCCAGCTTTAGTTTCAGCATTTTTAAAAAAATCAATTGACATTTTCATGTGCTATGATTAGCCCATCCGCGAAACTGAACCTTGAAAACCAAATAGAGATTAGCTTTCCGGCTTCCGGG # Right flank : GCTCTCATCATCTCTGCTCGTTCCTATGGTGCTGAATTATATATAAGACTAATCTTTAGTGCAAAAGAATTCCTATCTTTGAGCTCTGCAAGATATTTGACTTTTAAATAAGTAGAGCTAATATGTTTTATTACATTTACAAAAGTTAAAGTACTTGATTAACTTTTGTAAAGCAGTGTAAATTACTCACATAGGCAAAAACACGCCTAATTCATACATACATATAACCGCAATCATAAAACAATGACAGCAACCTTACAACAGCGCTCGAGCGCTAACGTATGGGATCGCTTCTGCGAATGGATCACCAGCACCAATAACCGTTTATACATCGGTTGGTTCGGTGTCCTCATGATCCCAACCCTACTAGCTGCAACCGCTTGCTTCGTAATCGCATTCATCGCAGCGCCTCCAGTAGACATTGATGGTATCCGTGAACCTGTTGCAGGTTCCTTAATCTACGGAAACAACATCGTCTCTGGTGCAGTTGTTCCTTCTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 3436-2753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000109.1 Aulosira sp. FACHB-113 contig109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3435 37 100.0 34 ..................................... TCTCAAACTTCTTTAGATGGTGCTTTTAAAGAGT 3364 37 100.0 34 ..................................... GAGCTTGTCTAGCCTTTCATCCCAAATCCCTTCA 3293 37 100.0 35 ..................................... CTAGGACTAATGCGCCAGAAAACGCACCAGATGAG 3221 37 100.0 34 ..................................... CCGCAACTATTGCTAAGTCACGAGTCTACTAAAA 3150 37 100.0 34 ..................................... TTAATGTGCAATGCGGTAATTGCTCATCTGGTAG 3079 37 100.0 36 ..................................... ATTAAGATAACGATTTCCTGCACAGAGCTATTTTGT 3006 37 100.0 36 ..................................... AAGGAATTCAGACAGCAGGTATTGAGTTTGCTCAAT 2933 37 100.0 34 ..................................... TAAGGGTTGCTCGTGTCCACTGTGGACACGAAGG 2862 37 100.0 36 ..................................... GCGCCGCTTTTAGTGCGTCGCACTGCGCCATCTAAA 2789 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 100.0 35 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACCTGATCGGGTTGTCTATCAATGAGCGCTCATCCATAGAGAACATCGGTTCCTTCACAACCAACCAGATCGGGTTCTCTATCAATGAGATCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGATCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGCCTGTGCTGCTAAGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAGAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCCACCGCTTTATTGCTTCTTAATCACCCGCGCGCCTTACAGGGATTGACTTTCAGCCATTTTGGGTTTGCTGTTTCATTCTTGCTTATGTTATGATTGCACTGTCCGCGCAACCGAACCTTGAAAACTATATATACATTGGCTTTGGGGCTTCCGCA # Right flank : AGCTAACACGCGATTCTCATTAACTGCTTTCTCAAGTTGAAATTTCACCTAATACCAATTTAAATAATATTTGCGACAAATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTAGATCAAATTATGTTACTGGTGCCGTGCCCCCACCAAGTATTAGAAATTGAAACTGATATTTAATTTCTCTGCACATTCCCTAGGCTGGTTGAAATTTCACCTAATACCAATTTAAATAATATTTGCGACAAATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTATATCAAATTATCTGACTGGTGCCCATTGGTGTCAACTTAACGTGAAACCCGCTTGGCGACAACGTTCTGCCCTCACCCCCAGCCCCTCTCCCACCAGGAGAGGGGAGCAAGAGATTTAATTTCCCTTCTCCTGCTAACGCAGTTTTACCAAGTTAAGGGAGCTAATAGGAGAGGGGAGCAAGAGATTTAATTCCCCTTCTCCTGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 3386-2768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000090.1 Aulosira sp. FACHB-113 contig90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3385 36 100.0 42 .................................... ACCTGTAATAGCACCTTGATGTCGGCTACCAGCCTTGTAATC 3307 36 100.0 35 .................................... AACTTCATGCTGCTTGCAAATCTTGAAAAAACCAA 3236 36 100.0 36 .................................... TCTGAGCCATAGTACCTTTGAGAGCATCTTTGTCAT 3164 36 100.0 39 .................................... ACTCAGGTCAGGCACACTGCCACTGTGTCCATGAATTGC 3089 36 97.2 35 .....T.............................. TGTTAGCCTGGCTGTTTTCATCTACATTGATGCGT 3018 36 91.7 37 ...G..G........................A.... ACTGTGGCGCAGCTCATCTGGAAGAAGCCATTGCTGT 2945 36 88.9 34 ......G....A..A....T................ ACACAAGTGTTGGGAGCGATAGACGCAGCACCGA 2875 36 83.3 35 ...G..G...G.A......T..G............. CGACGAATTGCCCAGCGCAGTTGAATTTCTATTTG 2804 36 77.8 0 ......G...G.A..A.....C........AA...T | G [2799] ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 93.2 37 CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Left flank : TTTAGTAAGCAAAAGTAGATATTGCTTTCTTCAAAGCTGCTTTTGCTTTCTCATTTAATTGTATTTAGTAAGCAAAAGTAGATATTGCTTTCTTCAAAGCTGCTTTTGCTTTCTCATTTCAGTATATTTAGCAAGCAAAAGCAACTATTGCTTTCTCAAAAGCAGCTTTTACTTTCTCATTTCAGTGTATTTAGCAAGCAAAAGCAACTATTGCTCAAAATCCACCAGTTAGATTTATGTAAAAATTAAGTAACAAATCTGACTAAAAATCGGCAAAAGTTGTATTTTAAGGATAGTTTGTGTCCTTCATCGACACCAATCACCAGCACCTTGAAAACCGCATAATTTCTTTGACTTCTGTCGATTGCCTACGCAGCAAAGCTTTCAGGTTTTGACAGCTTGGGTTTACTGAGAATTCTTTGGAGCTATTGACACTCAAAAAAGTGGTGTCGATTGAGGGGTTTCAAACCCTCTCCTGGTAAGGTTTCCAAAAGTGAACT # Right flank : CTATTAGTAGTAGCTGTAGTCAGGGGAAAAGCATTCGCTAGGCGATCGCATCACCACGGCAACGGGATAAAAAAAGTGAAGATAAGCAGTGCGATCGCACCTACTCAAGCAAACATTGCTGTCCATCTCCCTCGTCAATCCTCAGTGGTGCGTTATACTGCAGGCTGACGCACCTACCGCTTTGTGATTTGTGATTTGTCACAAAATGACAAAGCGCAAAGTCTGAGCGCAGGTTTCCTCCGATCAGAACTTTGTAAGAATGACCAATAACCAATGACAAAATGAAATTTTTCCGGATTTGAATTCAGGAAAATAGAGATCCTGATTTGATTTATACTTTTAGATTCGTCTGATTATCGAAAAGCTTGAAAGTTGTATGTCCAGCCCCAGTCCCGACACAGTTCGCGTTTATTTGCAAGAGATTGGTCAGTACCCCTTGTTAACAGCAGACCAAGAGATTGCTTATGGTAGGCAGGTACAGCAAATGATGGCCATCGAGC # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 2068-1443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000087.1 Aulosira sp. FACHB-113 contig87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2067 37 100.0 36 ..................................... TCTTTTCTCTGACACTTTATAATTTACAAAGCATCT 1994 37 100.0 36 ..................................... CTCCTTCTGGAACACTAAATATTACTTCTGCATTAG 1921 37 94.6 38 ...........T.........A............... TCTGATGCTAACTCCATTAGCTTTGCAATAATCGGATC 1846 37 91.9 35 ...........T.........AT.............. AAGAAATCTACTAGTGTAGAACCATTCATCCTTGA 1774 37 97.3 39 ...........T......................... CCATCTTCATACAAAGAAACCAGAACGTTTCCATTCTGG 1698 37 100.0 37 ..................................... AGCTACTGCGCCGAAATCGATAATTGAAGTTAACATT 1624 37 97.3 36 ................A.................... GCGAATGTGTGACGATTAACGTATGGCTTACGATAT 1551 37 97.3 35 ...........T......................... ATAAAACTATTACTCATTCCCAAAATCTCAGCGAT 1479 37 86.5 0 ................A....AT....A........G | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 96.1 37 GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Left flank : CAGCCCCTCTCCCACCAGGAGAGGGGAGTAAGAGATTTAGTTCCCCTTCTCCTGCGGGAGAAGGGGTTAGGGGATGAGGGCGCGAAGGATTTGTACAACGCCTGCCCTATATAGCTTTTAGCTTAAGTTAACACCAATGGGCACTGCCGTGACCTCTAGAATATTATTGATGTGTCGCAAACATTATTTGATTTGGTATGAGTTTTGTATTCGTGCAAGAAGTCTAATTTATTGGGACTAAAAGCTAGACAAGATTTGTAAGTGGTTTTATCATTATGATGAATTTAACAGCTTGATGTTTGGCAAGTCGAAGTGAGGGCGAAAACCCTGGGGGATATGCCAAAATCGCCAGAACCTTGACAAGTGAATAATTACAGCGTTTTAGCAATCAAAAAAGTTGCAAATTAGTTTCAATAAGGTGGGCTGAAAATGATTAAAATTTTCGATCTGCCAAAATGCTTTCCAGGAAGCTTGCTCTGGTTAGGTTTCAATACCGAGCT # Right flank : GATAAACACCATCTGTCAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAACAAAGCTCTAATTTTTGCAAATACGGTGTTCAAGTGCGATCGCCTCACCAGTCATCAACAATTCTGGGTGAGGGAATGCGATCGCATCACCCTAAAGAGAATGAAAACACTTGAGTAGCAACGTTTCCGCTTGCAAGGCTGATACCATTTTGAAAAAAGAACGCGACAGATGAGTAGGGGCACGGCACCAGTAAGATATTTGATATGCCAAAAGATTGAGGATGCCGTGCCCTTACAAAGAATTTATCT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Alternate repeat : GTTTCCACAACTTATTCCCCCGCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 1 135298-136356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000012.1 Aulosira sp. FACHB-113 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 135298 37 100.0 35 ..................................... AAAACTTAAATGATTATTAATAAGTCCTTGTAAAG 135370 37 100.0 33 ..................................... GGGATTAAGTTACCTGAAGAAATTCAGCCATTT 135440 37 100.0 33 ..................................... GATAGTAAAATATTCATTACTAGTAGGGACAAG 135510 37 100.0 31 ..................................... TCTTGCTGATAAACCTCATAGCCCTCTAGGT 135578 37 100.0 34 ..................................... TGTACATAGCATTAGTAAACTTATCTGTAGCGTT 135649 37 100.0 32 ..................................... AATAACCGCAAAGACATCACCAGAAAAGTTGT 135718 37 100.0 39 ..................................... TAAATCCCCGACTGAAACTGATGCTACGTATAGACGCAG 135794 37 100.0 35 ..................................... GCGCTGACTAAACTTATTGAGCCATAAAACCTCAG 135866 37 100.0 41 ..................................... GCTCTACTCTCTTAGGTGCAACTTGGTAGGCAGAAGCCATC 135944 37 100.0 34 ..................................... TATCTGCAAGTCACTCAAAGACATGGACGTAGAG 136015 37 100.0 34 ..................................... AGAATTACAATACTGTGCTTCTAGCGAGTATCTT 136086 37 100.0 42 ..................................... TCTATAAGCCACTGTGCATATTTACTGTGTACATCCTTGCAC 136165 37 100.0 40 ..................................... CTACAGAGATCGTGCTGGGGTATGGTGGTTTACGTTTAAA 136242 37 100.0 37 ..................................... TAGCTCGGAAAGGGACTAAATAACCGGAATTAATAAG 136316 37 94.6 0 ...........................A........A | ACT,T [136345,136353] ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 99.6 36 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GATATGGCAGTGGCATTATCCCTACTAAACACGCTGTACCTCTCAATCATGAGAATTCTACTAATCCAGGTATGCAAGATAGCAGTACTAATCAGCCGAGAATATCTTCTTCCCGCAAGCAACCGTCTTCTAATCTGATTAATCGCATCATGCGTTCATTTACCAAACCCAAAGGTGTTAAAAAAAGAACAAGAAATTAAATTCCATCTTGCTTGAAACTTGGTAGAGTATAATCTATCAGCAAAACTCGTCAGGTTACTCTTGCTTCCCAGATGCGCGGATGGGTAGGTGTGGAAAATGTAGTCTCACTCAAAATAGGTGAAACCATTTGTGTGTAAGACTTGCACCTATTTCTTGATGTTCAACCACCCGCGCGCCTTACATAGAGAAACTTTCAGTCATTTTGGTTTTGCTTTTTTGCGATCGCCTATGTTATCATTGCTCCATCCGCGTAACAGAACCTTGAAAACCGCATATACATTAGCTTTGGAACTTCCGCT # Right flank : AGTAAATCTTAAGTAGGGTGTGTTACGGCTATGAAAGGATTTCGGATACAGAGACAATGATATTTAGCCGTAACGCACCGTCGCGTGGATGGTGCGTTAGGCGCTAGGATAGTTATTGCGTGACAAATTATATTGAAAGTCAGCGCCTAACACACCCTACAGTAATTTTATTTTTACTTTATAAATAACCTCTTAAGTAGGGTGTGTTACGGCTGTGAAAAGATTTGAAACTTAGAGAAAGATTAGATTTAGCCGTAACGCACCGTCGCGTGGATGGTGCGTTAGGCGCTAGGATAATTATTGCGTGAAAAATTATATTGAAAATAAGCGCCTAACACACCCTACAGTAAAATTTTACTTACTTTCTTCAGGATTAAAACCCTTTGCTTTCAACCAAGAATAGATGATAAAAATGAAGATGAACGCTATAAAAAAGCCCGCACAAGCGGGCTTTTAATTGATTACCAAACTCTACAAATTGCCTATTACCTTATGCAACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 19326-18697 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000013.1 Aulosira sp. FACHB-113 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 19325 37 100.0 36 ..................................... AAATATACATCATGAATGATAACACCAAACTAGCAA 19252 37 100.0 38 ..................................... AACCTCCCACTTCCAAATCCTGCCACCTGCCTTATAGT 19177 37 100.0 34 ..................................... ATTGGTGTTAAGTCTGGCGTAATGGTAGTTGGTG 19106 37 100.0 41 ..................................... ACTTAACGGGGTTCTGCCATCAGCACCATGTGAAAGGGACA 19028 37 100.0 33 ..................................... AGATCAATTGAGGCAGCGCATTGAATTGATGAA 18958 37 100.0 37 ..................................... ATAGTTACTCTAGACTTAAAGAAAGCTAACAAAACTA 18884 37 100.0 40 ..................................... TCCCTTCCGTTGATACCATTTATTCCCGGTCTACCATCTC 18807 37 100.0 38 ..................................... CAGAGATTTTACTGTAACCAGTGCGATCGCACCTTCAG 18732 36 89.2 0 ............................-..AC...A | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 98.8 37 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : AGTACAATCGGAAGTTATGCCGCAGGAATTTGCCAAGCTAACAGTGCCAACACTGTTGGTAGCTGGGGAGTATGACAAGATTATTCCTGCTGAGATGGGGCGACAAGCTGCAGCGATGAATGAAAAAGTTGAGTTTGCCATGCTTCCTAATACAGCGCATTTCCCAATGTTAGAAGATGCTCCAACTTATCTACGACGGGTGGGGGAGTTTTTGCAAATTCCCACAAAAGTTGATTAAAGTTGATGTCCAATCTGACAACTTTGGTTGCAGAATGCGCGGATGGGTAGGTGTTGAAAACTGCATTTATATATAAAGCGCTGAAACTCCTTATCTGTAATAATTTCAAAGATTCATTGCTGTTCTATCACCCGCGCTCCTTACACAGACTGACTTTCAGCGATTTTGGTTTTGCTTTTTCTTTATTGCCTATGTTATGATTGACCTATCCGCGCACCAGAACCTTGAAAACCTTATATTAGTTGACTTTCAGGCTTCCGCA # Right flank : TTAAGAATAACCTATCCCACTATTTTTAAAACCTCTAAATCTAGTTGTAAAAAATGCCTAAAAACCTTGATTTTTCGTTTTTAATTCTCAACTCAGTCTAAGTTTTCTAGCGCAAATATTATTAGTGGGATAGGTTCAATTAACCCAAACCTAATTCTCGTTTCAATAAATTGATGGAATTAGTACCAATATAATTATCAACCTTAATCAACTTGGGCGGACGAATGATGTCTTCTACCGCCGCTTGTACAGCAGCTTGCACTGCTGCATAACTTGCTTGATCGCTGATAATTACCTCGGCTCGCTTGACGATCGCCTGAAGTTTGTAAGCATCTTTTGGTTGGGTTGTCATTACCAATAGTTCATCTCCCCGGAGTCCGTGAAGAATCACTTCGGCGGCGCGCGCAATTCCAGAACTTAAGCTGACTATGCCCACACAGTTTTCTTTGGGCAAGGTTTTCAACAAATTAAGTTCTTTAGAATAGTCGTAGATATCCAGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 17394-18513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000031.1 Aulosira sp. FACHB-113 contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 17394 37 100.0 33 ..................................... GGTCAGGAAGAACCGCCTGAGACTGTTGAATTT 17464 37 100.0 32 ..................................... CTATTAGCAATTATGGTTCATGGACGATGGAC 17533 37 100.0 34 ..................................... TTAAAGATGAAATCGAGCAAGCTGAAATAGATTT 17604 37 100.0 37 ..................................... AATTGAGGATATTGATGCACTGGTGCGTAAGCATAAG 17678 37 100.0 35 ..................................... TCATACAATTGAGAACTCATCCATTAATTGAGCAA 17750 37 100.0 36 ..................................... TTAAAGATGAAATCGAACAAGCTGAAATAGATTTAT 17823 37 100.0 38 ..................................... AGACAATTTAACCAAGGCTAAAACAAGGTATATAAAAT 17898 37 100.0 34 ..................................... AACCAAAGGGCGATAAGCAATTCTCTATTTACTA 17969 37 100.0 40 ..................................... TGCCTACCTTTTTTGCGAATGATGTCTAGACTTGGTAGTG 18046 37 100.0 35 ..................................... AAGGGTGATTGAAGTTAACAATGAGAAGCTATCAA 18118 37 100.0 33 ..................................... ATTCGATGTGTAGGTAAACCATTTATTACTTCC 18188 37 100.0 36 ..................................... TACATCTGATAGTACGACAGAGACAGTGGACTGCTG 18261 37 100.0 35 ..................................... AACATTGACAACGCTACCACTACCAGTTCCCGGCA 18333 37 100.0 36 ..................................... TGCTACCAATTACAGCAGTAGCAGAAAACCTCAACA 18406 37 100.0 34 ..................................... TGGCCATGATGAAAACCAATTAGAACGCACAAAC 18477 37 81.1 0 ....A..............T.......AA...A.G.G | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 98.8 35 ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ATTTAGGGGAGGATGATACTGAGCGCCCTTTTGACTTAAGTCTGGTGCAACCTGTCACTGAAATTACTAATTCGTAATTCGTAATTGGTAATACTCTTGCTGCATTTCTCACAAGCAGCGATACAGCATATCTATGTTAGGTTAAGCGCTGGCTTAACCTAACATGGATATTGAAAGCTTCACTTATATTTTTTGTGATGTGGTTGCTGCTTTGATCAGTTTGAATCTATTGGCGAAGAACTAGTCCGGAATGATACGATTTTCTTCACGGGATGCGCGGATGGGTAGGTGTTGCAAAAGCGGTTTCCACAAAAATCTCTGAAACTATCTTTGTATCAGGCTTTTCAAGCTCCATTGCTGTAAAATCACCCGCGCACATTACAGAGAAAGGCTTTCAGCGATTTTGGTTTTGCGTTTTTACTATTGCTCATGTTATTATGGCACTGTCCGCGCAACAGAACCTTGAAAACTGCATACACAGTGCCTTTGGAGCTTCTGCC # Right flank : GTGTATTGAGCAAAGTAAAAATCAAATAACTGTAGGGTCTATTAGGCGCTGATTTGCAAGATGATTTGTCACGGGATAGCTATGCTAGCGCCTAACGCACCATTCACGCGGCGGTGCGTTACGGCTAAATTTCTTTATCTCTGTGTCCCAAATCCTTTCATAGCCGTAACACACCCTACTGGGCTGACTCCATAGCAGATGTTTTTGACAAAATACTTGCGTTGTTAAACAAAGTGCTTGTCTTGTGTATACGCCACTCTACAAACTAAAAATCAAAGGTTGTCCGCAACACTCCAACATATTGGGTATTATTGCTGCTATTGTTCTCTGGGTTGAGAATTACCCAAAAGCCGGGAGTCACTGAGATATTATCGTTGAGCCGCATACGGTAAAAGGCTTCGATATGGTAAGCATGGTCGCTTTCTTGACGGATATCGCTGCTGGTAACGTGGGGTGGGATACCAAATAAGATTCCTGGGAGATTACCTCTTCCTCCGAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 58564-57809 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000033.1 Aulosira sp. FACHB-113 contig33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 58563 35 91.4 37 T...T........T..................... ACAAATTTTCGGAGCGGTGGTATACGCAGTTGAAACT 58491 35 97.1 39 .............T..................... TGTGAGTGTTAAAGGCTTTAACGCCTTTGCAAGCTTTGA 58417 35 97.1 40 .............T..................... AAAAAGACCTTGAGGCCCAGAAAGCTGCTATCGAACAACA 58342 35 97.1 36 .............T..................... TGCATATGCACAAGCGTGGAGCAGCAATTCAACTTT 58271 35 97.1 38 .............T..................... GGAATATTCTATTTCGCTTTCCTAAGCAGTGTAGAATT 58198 35 100.0 34 ................................... TCTTTGAAAAATTTGCAGAGGAGTTTACGTTTAT 58129 35 100.0 37 ................................... ATTTAAGTAGAGTATTGTTTACTGCAAAAGCAATAAT 58057 35 100.0 35 ................................... CTTATATGGCTAATTCTATTTTTGCTTTTCGGATT 57987 35 100.0 38 ................................... AAAAATCCTTTACACTCTTATAGGTTCCGTAGGAACTA 57914 35 100.0 36 ................................... AGTTAATTCAGCCAATCTGCAAACTGGTAAGGAAAT 57843 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 11 35 98.2 37 GTTTCCATCCCCGGGAGGGGTAATTGATTGAAAAC # Left flank : ATTTGTACATTCATTGTTATCTTTCCGAATTAAATACTGTGTAGAGAGTTAGTTCCGGAAAGGTGTTATGGGCTGATTCACATAGCCGAAAATATTTCTCGTTGCTCTAAACATAACACTTGCATCTGTGATGAGATTGATGAAACTTTACAAGTGCTGATCACCACAAGTAAATATCTTTGTAAGCTATACAGCTAAGTGATTATGGCTTTTGATTTAACCTAAAAAATTTAATTATTATCTGGAGTAGTTTCAATCATAGCCATAGAAGGTAATACAAATTTAACGGTATTATTTGGTTTGAGGGTGTACTACAGATAATACTAAAAAGTTTCTTCTTGATATATCTTTGTATTTCTTTATATATTTCTTGAGATTTGACAGTTTATTTACATCTATAAAGAATGCGATCGCATCCCCACACTCTCACATTTTCTCTTCCCCTTAGTTCAAGTCATGCTGCAAAATGCGATCGCACTACTTCCCCTAAAACTCTCTGC # Right flank : CCTAACCTTGTAGAGAGCTTACTGAATAAGGCTTACAGAACCGTAAAACTGAGAGGGGTATGTTTCACCTGTCAACAAGCCACATTTATTGACAATATGGACAGCCTTCAAGTAACTCAAACCCTTATAGAGTAAGTCATCTGAGGGGGTCTACGCAAGAATCAGCATTTGAGCTTTTGCACGACCCCCTCAGGTTACATTTTTTAACACAATGGCTGAAGGAAACTAACCATGAGGTTACAAGCCAAAGATATATATTTATTGAATTTTCAAGGTGCAGCGATTGGTATAAATAGTAGCATAGCCAATTCTGCAAGGCAATCTCTGCCTCACAGCAATTTAATCAGCAAAAGCAAGTATTGCTTTCTTCAAATCTCCTTTTGCTTTCTCAAAAGCTGCTTTGGTTTTCTCATTTCAGTGTATTTAGCAAGCCAAAGCAGATATTGCTTTCTCAAAAGCTGCTTTTGCTTTCTCATTTCAGTGTATTTAGCAAGCCAAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGGGAGGGGTAATTGATTGAAAAC # Alternate repeat : GTTTCCATCCCCGTGAGGGGTAATTGATTGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 44106-44787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000034.1 Aulosira sp. FACHB-113 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 44106 37 100.0 35 ..................................... GCCAGCAAAAGAGCCAAATAGGGATGCTATAGAGA 44178 37 100.0 34 ..................................... CAGTTTTACTTCTCGGCTTTTGATTCAGAGACTC 44249 37 100.0 36 ..................................... CATTTTCTTACTAGTAGCGTACAGAATAACCGATAA 44322 37 100.0 36 ..................................... AACGAGGAGGTGAGCGAGTAAGAAACTAGTTAGGGT 44395 37 100.0 37 ..................................... CTCTCATGTAAGCGATCGCTAGTTCCAAGGCTTCAAA 44469 36 97.3 33 .........................-........... TTCGACCAAAACGCCAAACCCAAGCTAATAGTC 44538 37 100.0 34 ..................................... CAGCAGTTAAAACTCGATTTATTTTTAATGCCTC 44609 37 91.9 33 ........T...T...............A........ CTGTCTTCTAAATGTGTTTATGCAGAATTTTAG 44679 37 78.4 35 ........TT.T......A..C.....A.T......T ATATTATATGCAAGTCCACAAAGTGAATCACAGTT 44751 37 70.3 0 C......GTA....TG.......TA..C....A...T | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 93.8 35 GTTGCAACCGTCCTCTCAGCAATGGGAGGGTTGAAAG # Left flank : CAAAAGAATTAGCACTTTCTACCTACCATAGCCGCCTAGCTAGGTGACATTGACAAATATCTGAACCTTGACAATAAAATAATCAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTCTGAAGTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTGTCAACTGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTCAATCACCCCCGACCAAGGGGGAACCCTCCCCAATTCTTCATTTGAAGGACTAAAGAATGGTCAAAATTCCGCTCTTGGTTCGCGCAAGTTATGAAAACCTTATACTACAAAGAATTTAGTCATAAATTTCTTTTGTAGATAATTGAAAAATTACATCCTGGGAGGATTTTTGAGAAGGTTAGCTCAAGCTGGGTTTGAAAACCCTTCTAGACAAGGGTTTGAGATGACAGCA # Right flank : TTTTATAAGCTATTCCTGATGCTCGTGGTTTTCTATTGAAGCGTTTCTCGTATTAAGTTAAAGAACGGGTATAGCAACAATTTTGAAAAACTTTAGAACGTTTAATAATTTAATAACCCCAAGTATTTAGGATAAAATAATAAATTCTCTTGTTTGTGTGGGTTGAAAGCAAATCCGACTGCTGGCTTGATATCATATAGAGTAAAGCCTACATAACTCATGAATTCTATATTAGATGACATTAATTTGTCACTATTTCCCTACAAAGGCTTATCTAGTTTCAGCGACATTAATTTGTCTTCAACGACAACAATTTGTCACCGACGACAAATAATTAGTCACTGTACATTTGCGAATCGCGACATATAATGTACGAATGTAAAATAAACATAAAGCCAGCAGTCGGATTTGAACCGACGACCTTCCGATTACAAGTCGGATGCACTACCACTGTGCTATGCTGGCGGGCTGAGGTGTTGCTCTTAAGCACTAACCGATTT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCGTCCTCTCAGCAATGGGAGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.70,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 86870-85825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000042.1 Aulosira sp. FACHB-113 contig42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 86869 37 100.0 34 ..................................... CTTGATTTGCAAGGGTTTGAGGGGTGCTGACTGT 86798 37 100.0 34 ..................................... ATATACTATCGATGCCCCAGTTTGCCTGCCTTTC 86727 37 100.0 41 ..................................... GAATCAGCAATAGCTAGCGATAAAAACGCTAGTAAAGGCAA 86649 37 100.0 35 ..................................... TTGCTGCTTCTATGTATTCGGGTGAAGGATTTTTA 86577 37 100.0 34 ..................................... ACAACTCTTGGCGAAAACCCACTCATTGAATTTC 86506 37 100.0 34 ..................................... CTAATAGCCTCCAGTATTTTGATAAACCTATTAC 86435 37 100.0 37 ..................................... GTAACTTTGATTGTCGGTAGTGTCAATAGGATAATGT 86361 37 100.0 34 ..................................... GGATCTGGGGTGTAATTCGGAATATCAGAATTTG 86290 37 100.0 34 ..................................... TCGATAAGTAACAACGGCTTTTTGCTTCCTTTAA 86219 37 100.0 34 ..................................... ACAGTGGTGGGAGTTCCAACTTTCACTCCATGAG 86148 37 100.0 37 ..................................... CTTTTTCCTCGTCCATCATTGCCTTGTATTGGCGCTC 86074 37 100.0 32 ..................................... TAAATTGGTTCGCTTCTAATGGGCGTATTATT 86005 37 100.0 36 ..................................... AAGAGAAGGTTAAGGCGATTTTCTTATCCAGGTAAA 85932 37 100.0 34 ..................................... GTGACATTGCCAGCACACTTACTCAAGCATTAGC 85861 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ========================================= ================== 15 37 99.8 35 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : TTGCTGTCCAATCACCCGCGCACCTTACAGAGATTGACTTTCAGCTATTTTGGGTTTGCTGTTTCATTATTGCTTATGTTATGATTGCACTGTCCGCGCAACAGTACCTTGAAAACTATATATACATTGGCTTTGGGGCTTCCGC # Right flank : AAGGCTCACTTGGATGAGTATGAGAGCCGAGGTTGCAAAAATTCTCTCGCAAATAGATGGCGGTAAGGTATCAGTGGCACAATATCAAAAATGGCTGAAGAATAAAGCTGTAGCCTACGGTACAGAGCCAAAAGCCTTTCTTAAATATGCCGCATTCATGCATGAAATAGGGATGCTAAACAAGCAGCCAAAATCAATTGATGAATTAATTTTACCGACACTTCAAGGTGCTGGTGGAGATTAATTTATGGCAGATTTAGACTCGTTGATTGCAGCTAAAAATGTGCATATTAGCTACAAAGATAGTAAGCAGAAATTTACGGCTGTACAAGATGTTAACTTTAGTGTGAAATCGGGAGAAAAGTTTGCCATCATTGGGCCTTCGGGTTGCAATACTTGTCGGTTAAGGGGGAAAGGGGAAGGGGAAAAGGGGCAAGAAAAAACCTTTAACCCTTACCCTTTCACCTTTTCCCCAAACCAAATTCCGAGTTGAAAATCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 29420-27935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000039.1 Aulosira sp. FACHB-113 contig39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 29419 37 100.0 40 ..................................... GCTCTTGGCGTGATACCCAATTGAGTGGCCACATAAGAAA 29342 37 100.0 36 ..................................... ATTACATAATCATTATTTATAGGAATGTCAATTAAG 29269 37 100.0 34 ..................................... TTGTCGGCACTGAAAGCACTTCAAGAAGAGGATA 29198 37 100.0 41 ..................................... AATGCAATCTAGTATATTTTCTTTTGGACAAACAGAAAGAT 29120 37 100.0 36 ..................................... CATCCACTAGAGAAGAATACTACAAAGAAAATTTAA 29047 37 100.0 34 ..................................... AAATACAAGTATTTCAACTATTCCCTTGAGTTTC 28976 37 100.0 35 ..................................... ATCTGACAGCGACCCTGCGGTAGTTGCAGAGATTG 28904 37 100.0 35 ..................................... ATCAGCCTCCTTATTTTGCAAATAAGATGCAATCT 28832 37 100.0 36 ..................................... GAAATACTTAAGCTACTACTTCGATTCCTTTAAATG 28759 37 100.0 33 ..................................... AATGGATCTACACCGGAAACACACCAAGCTGGG 28689 37 100.0 34 ..................................... TCAGGCTTAGACTCTGCATACTTAATAAACAATA 28618 37 100.0 34 ..................................... AAAAATAGAAACTTGCCCAAAAATTGCAATAGAA 28547 37 100.0 36 ..................................... CTACTACCGCTATTAGTTGGAGTAACCTGACATTGG 28474 37 100.0 36 ..................................... ATTTCAGGATAGTAAGTTGATTCGTGGCTTGAATAT 28401 37 100.0 33 ..................................... TTTAGGTTTATCCGGGTGTCCGTAAAAAATAGA 28331 37 100.0 36 ..................................... AAAGTCTAGATTTGGCTGAAATAATACCAAGTTTTC 28258 37 100.0 35 ..................................... AAAATCAAACCAGCCGCAGCTGTATCAATGCCAAT 28186 37 100.0 34 ..................................... ACGTTACTCAAACCCTGTGCAACATTAGCAGCCG 28115 37 100.0 34 ..................................... GGCTTCCCAGATTTTCTACCTTTTCTGATTTGTA 28044 37 100.0 36 ..................................... ATCAAGGCTGCATGGGATGAGTGGGTGCAAGGAAAG 27971 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 21 37 100.0 35 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACGTGATCGGGTTGTCTATCAACGAGCGCTCATCCATAGAGAACATCGGTTCCTTCATAACCAACGTGATCGGGTTGTCTATCAATGAGCGCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGCTCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGCCTGTGCTGCTATGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAGAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCTACTGATTTATTGCTGTCCAATCACCCGCGCACCTTACAGAGATTGACTTTCAGCCATTTTGGGTTTGCTGTTTCATTATTGCTTATGTTATGATTGCACTGTCCGCGCAACCGAACCTTGAAAACTATATATACATTGGCTTTGGGGCTTCCGCT # Right flank : GATATTAAAAAACTAGATGTTTACTGCAATAGACTAGTATGAACTACCCACAGTTGGCTCCGCCTGAACTGTGGGTAGTTCATTTGTTAGAGATTCTAATACACTAAGGGAGTTACGCCGCGCATTTGACGTAAGGAATTGATGCAAGCTGGACAATCGCAACCAAATAATGCGATCGCAGTATCGCTTTCTTGATCATTAAACTCTAACATCGGTACACCATCTGTAGAAGGCTGTGCTTCTTGCTGATACTCTGGTATTTGAGCCAATACAGAAACTCTCATACAGACTAAACCAACTTTGTGCTTATTGCGGATACAAGATAGACGGTCAGTATTTGCTGGTACTGGATCTGCTGCTTGAGCTTGATTGATTGTCACTCCCATAGACAAGATAGAGCTTATCAGTACAGGAGTCGAAAGCAAGTGAAGTAAAAATTTGTTCATGAGTTTCCAGGTGAAGAATTTCGACTGCTCACATGAGCCGATTTCATCTTACAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 85018-86225 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000039.1 Aulosira sp. FACHB-113 contig39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 85018 37 100.0 34 ..................................... AGGAATGCGCCGCTAGCAGAACCAAAAGTTAATC 85089 37 100.0 35 ..................................... CAATTCTTAAAGTGTATTTAGGTTCCCATTTTAAG 85161 37 100.0 34 ..................................... CTTTTTAATAACTCAATACTAATTTGGCTGAAAT 85232 37 100.0 37 ..................................... ATAATTACCCTAATATCATGAAATGCCCATGACTTTG 85306 37 100.0 35 ..................................... ACTTCACTTCCTGATGAAGCCCCCGCCGACAACTT 85378 37 100.0 37 ..................................... GCAACTAGCGGGGTGATTTCAGCTTTTTTCATGGATG 85452 37 100.0 39 ..................................... GATCAACAACTCCCCCATTCTTTCCACTTCCGACAGTGA 85528 37 100.0 38 ..................................... TAACTGATACTACCAAAAACCGCTCAATTGTGCGCGAA 85603 37 100.0 36 ..................................... AATCAATCGGCGTATGGGGCAATACAGGGCATTCAT 85676 37 100.0 34 ..................................... TTCTCAAGGATGAGGGCTACCGAGCGTTAGGGGA 85747 37 100.0 35 ..................................... TGACATCCTATCGTAGACACGCTATATTAGAAGAG 85819 37 100.0 35 ..................................... GGGCTATTAATCATTGATGAATGTAGCCAGGTATT 85891 37 100.0 42 ..................................... AAACCATTAGTCCAGGGTTTTACTGTAACTGCTACTCTCTTA 85970 37 100.0 34 ..................................... GAATATCTTTGCTAAACCCACCTCCATCATTGTG 86041 37 100.0 34 ..................................... TGAGATTTTGAATTTAGGAATTAATCCTGAAAAT 86112 37 100.0 36 ..................................... AGAAGGATTTTTACAGCCATTTTGAGCGCTTGATTT 86185 37 83.8 0 ..........T...........G..T.C.....CT.. | GTGG [86206] ========== ====== ====== ====== ===================================== ========================================== ================== 17 37 99.0 36 GTTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ATTGATAAGAGGCAGGGGGCAGGGGGAACGGGGCAGGGGGAAAGGTACAAACCTTGCCCCTTGTGGGCAAAAGCCCCCTTGCTCCTTTTTCTCACTTGGTTGAAGCCCCAACGCCAGTTCTCTCAAGTCGGCACAGCCGCCCACGAGACTGGCTCCCCCTTGTGGGTGGTTTTTCTCCCCTGCTTCTTCACGTTTTAGCCTTCCCTAATGCATTGGCTGTGCTGCTAAGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAGAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCTACTGATTTATTGCTGTCCAATCACCCGCGCACCTTACAGAGATTGACTTTCAGCTATTTTGGGTTTGCTGTTTCATTATTGCTTATGTTATGATTGCACTGTCCGCGCAACAGTACCTTGAAAACTATATATACATCGACTTTGGGGCTTCCGCA # Right flank : CCCTGCGGGAAGGCTCCGCCTACGTCGTTCCTCTTCACTGTGGACAGGCTTCGGGAGCGATCGCACAACCATTAGCTAGATGACGAACCCAAGCACTAGGGGCAATTTTAAGACTTGTGTGTATACCGTAGCCTGGTGGAAGAGGGGCACAGGGTGAGGGCGAAACCTTGCAACTAATAGGGTTTCACGTTAAGTTGACACCACTGGTAGGAGCGATCGCTCCTACTCCCCTCCGACTGCTAGGTTAAATTACTTGCTTTCTTAACTACTTCCTTTAACTCTTCAAAGGAGATACTACCGTCTTTATCTCCATGCATAGCTAGCAATTCCTGGGGGCTACTGACACCTGTTTCAGCCGAGATAATTGCACTTAAACCAGGGCTTAAAAAAAGCTCATTGATGGAGATTTTGCCATCTTGATCGATATCCAAGGTATTAAAAAGAGATTGAAGCTCTTGCTCGGTTGCCATGACTTTCTATTAGAATTAATTTTTAAATTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 37606-36919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000043.1 Aulosira sp. FACHB-113 contig43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 37605 37 100.0 34 ..................................... CCAATAAATACAGTATTGTAAAGATTGCTTTATA 37534 37 100.0 34 ..................................... ATTCTGAACAGAAATCAAAGAAGTACTAGCAGAA 37463 37 100.0 37 ..................................... TTGGACTTCCGCGCTTGAGTCTGAGGTACTTTGGAAA 37389 37 100.0 34 ..................................... ATTCTCCTAGATTTTCCTCCACTTCCTCAATGTA 37318 37 100.0 33 ..................................... AAAGTCTCGCTTGCTCCTAAATCAGTAAGAGAC 37248 37 97.3 34 .......................G............. CCATAGAAATAATTATTAGCTGTTACTTGATTCC 37177 37 100.0 35 ..................................... TCAATTTATTGAGCAAGTTGAAAAGAACATTAGGG 37105 37 100.0 36 ..................................... ATTAGTCATTGGGTATTGGGCATGGCGATCGCTTGT 37032 37 100.0 40 ..................................... GCCTTATATACTGTGGCCCCTTGATATGGAATAGCAAAAG 36955 37 89.2 0 .............CA.CC................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 98.7 35 GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTATATCCTACGATATTTCCGAAGACAAGCGCCGCACAAAGATTCATAACATTCTCAAGTCTTATGGGCAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTAAATGACACCCAGTACGCCAAACTGCGATCGCGCTTGCATAAGTTGATTAAAAGCGATACGGACAATATCCGTTTTTACTCTCTGTGTAGTTGCTGCTTTGGTAAGGTTGAACGTATTGGCGGCGAACCAGTCCCCGATGATACTATTTTCTTTGCCGAATGCGCGGAGGGGTAGGTGTGGAAAAACTAGTTATCCCAAAAATTAGGTGAAACTATTTCTCTGTAAGGCTCTCACAGTTTAATTGATATTCAATCACCCGCGCGCCTTACAGGGATAGACTTTCAGGAATTTTGGTTTTGCGTTTTCACTATTGCCCGTGTTATTATGGCGCTATCCGCGCAACAGAACCTTGAAAACCGCATATAACTTGACTTTTAGGCTTCCGGT # Right flank : TTAAAACCGCCGCAAGCAGCATCATTTACTAACTTGATTAAAGTTGAAAGTTCACAAACTTATACCATTTTGAAAAAAGAACGCGACAGATGGGTGGGGGCACGGCACCTATAAGATCTTTGAATATACCAAAAGATTGTGGATGCCGTGCCCCTACATGGAATTTATCTGTCGCAAACATTATTTGAATTGGTATTACTCTTTTTTGAGTTTTTTACCATAAGTAAAATAGCAACTCCTGAACGGGTTGCTATTTTACTTAATAAGGCTAGATTTACACTTTATTCCGAATTAATGGTTCAATTTATCATGTTCGTCTTGGGTAACCCGGTAGACTTCCCTATCTACCATATGAATTTCATATACTGCATCTTTGCCTGGGAAAAATAAAAATCCTGGCTCTTTTTCTTCTACCTCTACTATTTCTGAAATTGCATTAGGATTAATCTCAACATGAATGCCATCTGTTGTTGTTAAATCTACAGGTTTCATGTATACCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 26737-27498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000061.1 Aulosira sp. FACHB-113 contig61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 26737 35 100.0 37 ................................... ATAGCTTGCAAATCAACTAGTTCTGTATTCAACAATG 26809 35 100.0 38 ................................... GGTTATGAGCCATGTAAAAGCTGCCATGTTTTGCCAGA 26882 35 100.0 37 ................................... CAACTTAGTCTGCCCCAACCTTCGCCTGCTGATATAA 26954 35 100.0 39 ................................... CTGTCACTTGGACAGTTGATGTAGAATTTCATTTTTTTG 27028 35 100.0 36 ................................... CTACTTGGAAAAACCATAGTATCCATGCAATGATAA 27099 35 100.0 35 ................................... AAAGCTTGCTTGCGCTACTACACCTTCCATTACTG 27169 35 100.0 39 ................................... CACTAAGTTTTTCAAGTCATCGGTTGTACCGTGAAAACA 27243 35 100.0 38 ................................... CTAAAATTCTTTCCCTTTCTATTTGGGCATCCCTTAAA 27316 35 100.0 39 ................................... TTGATTTCAAACTTTCAATCAAATTTTCAAAAACATTTA 27390 35 100.0 39 ................................... AAAAGTGTTTAGCCTGTCAGAAAACATAGCTTCCAAAAG 27464 35 94.3 0 .............................TA.... | ========== ====== ====== ====== =================================== ======================================= ================== 11 35 99.5 38 GTTTTCAAATCATTACCCCTAACGGGGATGGAAAC # Left flank : TATTCAATTCGGTATATTCAGCAAGCAAAAGTAGATATTGCTTTCTCTCAAGCCGCGTTTACTTATTCAATTCGGTATATTTAGCAAGCAAAAGCAGATATTGCTTTCTCACAAGCTGCTTTTGCTTTCTCCTTTGCGTAATTCCCTCAAAAATATCATTATGACTATGTAACTAAATTTTTTGGCTTTTCAAGTTACAAGTAATTTGTTATACTATGCCCTAATCGACACAGAACCTTGAAAACTGAATATCAAGTTTCCTGTTGAAAACAATAGTGTTTATTTTAACTATTGACACTTAAATTTTTCGCGGGGGTAGGCTAATCTCTGAAACCCTGATACTTTCGTTGACCCCCGCGAAAAGCTTGCTGGGTATGAGTTTGAAGTACCTCAAACTATGTCTGATTGTCAATAATTTATGCTTGTTGACAAGCAAATTAGACCCCCCGCGAAAATGGGTATCTCTAACCCTTTCTGGGTAAAGCTTCCAAAAGGGTAGG # Right flank : CAGCCATGAAAAACTCAGCAAATATTTGACGGTGCGTTACGCTGGCGCGATAACACACCCTACCAAATTACTAAATGTGATAGAAAAATGTTGATATCCCAGCGATCAGTTTTTTGCACATTAAACAGGTTTTTTAACCGCCTTCTGCTGTTTGGTTAATTCGATCATCTCTTCAAAACCGAAGCGATCAACCAATTCAATTAATGCTTTGGCAAGGCGATCGCTTTTTGGGGGAATTTGCTCAATTAATCTCAACACTTCTTTGCTGTTAACTCGCAGCGCTGCTTGATGCAGTTGTTCTATCCATTCTCTCGGCATTACTTCTAAGTCTGCAACTGTTAATGAGTTGGTGGGGGTGGATGCACTATTAGTAGATCCAATTTCCATATTTTGCTGCTGGTTCGCTGCTTGGGCGTAAACGTAGCGCACACCCAAGTGTTCCGCCATTTTGTCAAAGATGATATTTGCCCGGAAGGGTTTGCGAACAAAGTCATCAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCAAATCATTACCCCTAACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 103352-103095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQI010000007.1 Aulosira sp. FACHB-113 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 103351 36 100.0 41 .................................... AATTGCTTCGCCTATAGCAAAAACAAAAGGAAACAACATAG 103274 36 100.0 35 .................................... ATCAACCACATCAGCTATATAGAACACTTCATGGA 103203 36 100.0 37 .................................... TCATACCCGTGAATCGCTCACTCTTCACAGGCTTCAA 103130 35 80.6 0 T...-......TT.......TT........T..... | C [103124] ========== ====== ====== ====== ==================================== ========================================= ================== 4 36 95.2 38 GTTACAGTTACCCTTACCCCGCAAGGGGATGGAAAC # Left flank : AAGTTAACCGAGAAGGAACCGAAGCAAGCTAGTTCTCTCCATGAGGGACAGGTGGTGAAGGTGAAAATTTCGGCTGTTAAGGATGATGGGACGATTAAAAGCGTAAAGTATGTAAGTTAACTCAGTATTAATGCTTTAAGTTTTTTATAGGTAAGGCTTGACGAATATATATCTGTGAATCATATTATTTACATTGCAAATTTTTAGTTAAGTCTTACGTGCTTTCTCTAGGCTTAATAGAGAACAGAACCTTGAAAATTGCATAAATATCTTGGTTGTTAGGGTAGATTTCCATACTACCCTGAAAGGAAAAAGTGGTTTTGCGGCCGGGTTACCAAATCGCTGAAACCCTAGTTTTTTCGTAGACCCTGCCGATTGCTTATTCTGTAAGGCTTTCAGGGATTTTTTCTGGTTATTTTTGGAGGGGAGAAAAATAAAATGAGTACCCCGTCGCAAACCGCCTCTGGAAGCTATGGGTGATAAGGGTTTCAAAGCGAGGG # Right flank : AATTGAAATTCAGCACTGAAGTCCTTGCTACGAGACGGTTTTTCAGAAGTAATTTTTGTATTGCGTGCGGTGTTTACTGTTTTTCAAACCCTGAGTGTTACTGCTCTGAAGAATGATGGAAGTATTAAAACTGTGAAATTGATTGATTAATAATGAATTCTTACTACTAACTTCTTCTTAGGTCTAATAGTATATAAAGTAAGGCTATCTTAGCCAGCAATCTTTATAGGAACAAAACATGAATCAACAAATAACCACATACTTGGGTGAATCGCCCCCTGTTCTAGCATTAAGCTCAACTGAATCAACTTTTCAAGCAGCATACAGTACGAAGTCTTTAATAAATAGGAAATTATTATACATGGCAATCGAAGTAGAGTATATAGACGAGTTCGAGCAGTGGTACTTAACGCTTGGCGAAGCAGAACAAGACTCTATTGATGTTGTAGTAGAGTTGCTTGAGGAAAGAGGTGTGAATCTTCGCTCCCCCTATAGCACAG # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTTACCCTTACCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //