Array 1 1086-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNY02000027.1 Prosthecochloris sp. ZM_2 Scaffold_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1085 30 100.0 36 .............................. TGCGTCCAGATCATCAGCCGTGAACTGCTTGTACTC 1019 30 100.0 39 .............................. GCCAAATTCCGACGTAAAGCGGTCGCGCGCGTGCTGGAG 950 30 100.0 38 .............................. TACGTTCGCCGTTCTGTCCCAGTCAAAGCGCCTCAGCA 882 30 100.0 37 .............................. TCGACACGGACGACGAGACAGTCAACACGGACGAACA 815 30 100.0 36 .............................. TCGAATCGGCGCTCGATACCCTGGCAGGCATGCAAT 749 30 100.0 36 .............................. ATCCCTGCCCTCGATCAAAATCGGATCGTACCTATA 683 30 100.0 37 .............................. AATTGCAGCGTAACTCCGATAACAAGGCAGGTGATGC 616 30 100.0 36 .............................. CTCAACATGGGTAAGCTGACCCATGTCCAAATTCTG 550 30 100.0 38 .............................. GATTCCCGGAGCGGTTATGACCAGAGCCTTAGTCATAG 482 30 100.0 39 .............................. GTTGTCCTTGTCCAGCTCTTGCAGCATGTACGGCACAAG 413 30 100.0 38 .............................. TGCTACACCAAGCGCGGCGATATGATAGATGTGCTGGA 345 30 100.0 37 .............................. TGCTACACCAAGCGCGGCGATATGATAGATGTGCTGG 278 30 100.0 37 .............................. CCTGTTTAGTCGACAATCTCGTCTACGGTCGAGATGT 211 30 96.7 37 ....................A......... GCTGCTCACCCATGTCGGGTAAAGCACTCCTTCTGGC 144 30 100.0 37 .............................. GCAGCACCGTTAAGTATGTTTTTCAGCAAACTCATGC 77 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 99.8 37 CTTGTAATTGCACCAATGTGGAATTGAAAT # Left flank : GCTATCTCTTCAAGTGTTGGATTGCTGGTACTCTGGAGAGTGTGCAACATGGATGATTCTCGGTTCATGAATGTGCTCCTTTTTTCTGTAAGGTAGCACTTGCTTTTCACTTAGGGGCTCAGCCCTGAAACACAACATTTAAAGATAACTCACATGCCTTGAAGCTTGCAG # Right flank : TCATGCCCCGCGTCACCTTCCCACGCCCTTGTAGGCTCCTTGTAATTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 48-741 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNY02000010.1 Prosthecochloris sp. ZM_2 Scaffold_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 48 30 100.0 36 .............................. GGTGCCCGTTCGAAATCTCCGGCGCAGAATTCTGCG 114 30 100.0 38 .............................. GCCGCACGTAAGTCTTTAACCTCCCTCTGATGAGCCGT 182 30 100.0 36 .............................. AGGGGATGTCGATTTCAGGACCTTTTTGGGGCCACG 248 30 100.0 36 .............................. AGCACCATCGCATCCCGCTCGCAGCGGGAAAAAAAG 314 30 100.0 35 .............................. GCCTTTCAAAGGATGATAACATTTCATGACTGCAA 379 30 100.0 37 .............................. AATAAGATTATAGGCACGATGGAATAACGAAGAATGT 446 30 100.0 37 .............................. CTTGAGCGTGTACTTGCAGTACAGGATGAGCCGGAGT 513 30 100.0 35 .............................. CTCCAGTAAGTTCGTCGACAATATCCCTCTCGTAG 578 30 100.0 37 .............................. AGTGCTGATTTATAATCAGCACTCGGAACACTTGAAA 645 30 100.0 37 .............................. TCTCTTGCACGTCTCGGCGAACAGGAAGTTCTTAACA 712 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 100.0 36 CTTGTAATTGCACCAATGTGGAATTGAAAT # Left flank : GAATTGAAATGACATCTGCCTTGAAACCTCTTGCCTCCTCAAGGTTGC # Right flank : AATAAGATTGTATGCACGATGAAATAAAGAAGAATGTCTTGTAATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 2022-126 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNY02000044.1 Prosthecochloris sp. ZM_2 Scaffold_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2021 30 100.0 35 .............................. GTGCTTCTGCTACTATGCAAAATCCCATGGAAGAT 1956 30 100.0 38 .............................. AGGTATTCAGGACGCTGTAGGCGTTGATCGGGTGACGT 1888 30 100.0 37 .............................. GACACATCGGCATAAAAACCTTCGTTTTCGCGCATGT 1821 30 100.0 36 .............................. TCATTTTCGCGCATGTGATTAATAATACCAGTTTTA 1755 30 100.0 37 .............................. AACTTTTTTTTAACTTTTTTCGTAAGTTCGAACGAGA 1688 30 100.0 38 .............................. GTGCATAGGCTGTAGGTTACGTCGGTCGCAAGAATGGG 1620 30 100.0 36 .............................. CCCTCTGATGAGCCGTACTGCTCATACGCTCCTGAA 1554 30 100.0 37 .............................. AGTCCCGACACCACGCTCATTCAACCGCGGGTTGCTC 1487 30 100.0 37 .............................. TGATGTAATAAGGAGTATTACGAGGTTTACCACCTGA 1420 30 100.0 38 .............................. TGCTTCAGTGATCCGTTATATGCACTAACATTATCATC 1352 30 100.0 38 .............................. TAACGTTAACGCTCTTTTCTTCCGTGCCTACAATTTGA 1284 30 100.0 38 .............................. TGCCTACAATTTGATCTACAATGAATGGTATCGTGATC 1216 30 100.0 37 .............................. CACATCAAGACTTTGAGGATCGTTTGAGCGCATTTTT 1149 30 100.0 37 .............................. GACATCTGCCTTGAAACCTCTTGCCTCCTCAAGGTTG 1082 30 100.0 36 .............................. AAACCATTCATTCCAGATTAAATTGTAAGCACGATG 1016 30 100.0 36 .............................. CAATTCTTGTTGGACGTGTTACATAATCTTAAATGC 950 30 100.0 36 .............................. GCGGCTATGGCCCACCGAACTCACTACCGACCAAAA 884 30 100.0 36 .............................. GCTGTCTCCGGCACAAAGCCGGTCGCAAGGACAGAA 818 30 100.0 36 .............................. GATCGCACTGCAGACAACGGGTGTTGTCCGTGGCGA 752 30 100.0 36 .............................. ACGGTGCAGAAGCGGTTTGCCGATGGAGCCGTGCTT 686 30 100.0 35 .............................. GACGATAACGGAGACGCTGTGACGATCGGCTTTTC 621 30 100.0 36 .............................. CCGATCATGACCAGCGCATCGTCACCGGGCAGCTGA 555 30 100.0 36 .............................. TGAGGAAAAAGCTCGTATAGGTAATCAGGCTTGCAG 489 30 100.0 37 .............................. TCAGTAGAAACCACCTGAAATCATACCTGACTTGCGG 422 30 100.0 36 .............................. TAAGATCTTCCATAGGATTTTGCATAGTAGCAAGAG 356 30 100.0 37 .............................. TCTGCAAATGCGTGACAACGTTGCGCGAGGACGGCAA 289 30 100.0 38 .............................. GAGTCAAACGTTGTCTTGTAACCGCTCGTCCTGTCGAA 221 30 100.0 36 .............................. AATATTATGATGCACAATTTGAAATTACAGATCCTG 155 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 29 30 100.0 37 CTTGTAATTGCACCAATGTGGAATTGAAAT # Left flank : GAAGTGGTGCTCAACCCGGACAAAAAGTGAATAAATTTTTTTCAAAAAACACGACATCTGCGTTGACATAAAGCGCTCAGTCCATCAAGGACAGGATAAAGTACCT # Right flank : TCCAGACACTGATGATCTGATAGCTGAAAAACTGGGCATCTTGTAATTGGGGGTTGCTGAATAATAGTTAAATCGTTTCTTGGTAATGAATTAAGTGGTATTTTTCGTATCTTGAATGCAAGGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 3072-101 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNY02000050.1 Prosthecochloris sp. ZM_2 Scaffold_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3071 30 100.0 37 .............................. CAAGAATCCCGCCACCCGCCATCATCTTCGTCCCCAT 3004 30 100.0 36 .............................. GTCATCTCATGAACTATATCGCGTTCGTAATACTTT 2938 30 100.0 37 .............................. CATTCTTCGGCACAAGGAACACCGTCGGATGCTTAAC 2871 30 100.0 39 .............................. CCAGTACTCCGCCGCCTCCGAAACCCAGTAAAGCAGCTG 2802 30 100.0 36 .............................. AACTTTTTCTTAACTTTTTTCGTAAGATCTAATAAG 2736 30 100.0 36 .............................. CGCATTCTGCGGTTGAAATTAAGCAGATGAAGAAAG 2670 30 100.0 37 .............................. AGACGCTGAAAGCGTCATACAAGACATCAAGCCCTCT 2603 30 100.0 38 .............................. GTTTCTGGCAAACCGGGCTACCGGTTTCTGACTGGTGG 2535 30 100.0 38 .............................. GTGGGAGGCCTGTATAGGCCAGCGGGCGGCCTGACCGG 2467 30 100.0 38 .............................. GTTGAGCACGCTGGCTTGTGCGGGTTGGACTATTTTAA 2399 30 100.0 35 .............................. GTTTCTGGCAAACCGGGCTACCGGTTTCTGACTGG 2334 30 100.0 38 .............................. GTGGGAGGCCTGTAGGCCAGTGGCCGGCCTGTAGGCCA 2266 30 100.0 36 .............................. GTAGCCGGCCTAACGGCCAGTAGCCGGCCTGGCCTG 2200 30 100.0 38 .............................. GGCAGCTTGCCCTGGAGGAGTACATGAAACCCAGTCAG 2132 30 100.0 36 .............................. GTTTACCTTGGCCTCAGAAGGGACCCGAGGTTGATA 2066 30 100.0 36 .............................. CAGGGGATAGTGACAGGCATGTCTTCATACCCGTCA 2000 30 100.0 35 .............................. ATCTATACTTGATGTAACTGGTCGGACTGACACCA 1935 30 100.0 36 .............................. GCTAAAACCAAACCGGTCACAAAAAGCCCGAACCGT 1869 30 100.0 35 .............................. TGGAGGACGGCACGACCTTTGTCGTGCTGCACCAC 1804 30 100.0 36 .............................. GTACAGCAACAAATGATCAAGCTCCGCCGCATCAAC 1738 30 100.0 36 .............................. ACGTTTTTTCCTCCGAGGAGACCTGATCTGGCAACA 1672 30 100.0 37 .............................. TGATTCCAGCCTGCTTATAGGCATCACTCGTGTCGTA 1605 30 100.0 36 .............................. TAATAAACCCACGCTTGAGATACCCGCTTGCTCGGA 1539 30 100.0 36 .............................. CCATGTTGGCAATGGAATCTTTTTCCGGTTTCGATC 1473 30 100.0 36 .............................. TTGCTCGGAAACATATTGCCGTTGAACAAAAAAAGA 1407 30 100.0 36 .............................. GACCTCTCACGTTGATCATTTGACCGGCTGCTTACT 1341 30 100.0 38 .............................. GAGGAGCCGACGCCCCACTGATTGCCGCCCCAAGCCGC 1273 30 100.0 35 .............................. CTCGAATCGCTTGATGACGTGGCGAACTACACCGC 1208 30 96.7 37 ............T................. CAGGACAGAGCGTAGTCCTGCAAGAACATGACGACGT 1141 30 100.0 37 .............................. TAATATCGTTCAATCAGCGCAAGGCTTTCCGTATAGC 1074 30 100.0 36 .............................. CTGTGTGAAAAGTACGACCCGCTCGCAACCAGCAAC 1008 30 100.0 37 .............................. TAAACTCGGCTTGTCGGAAGTGTAATTTCTCCTGTAA 941 30 100.0 37 .............................. CGCCCCAGGGTAACTTGTCTGCAATAGGTACAGCTTC 874 30 100.0 37 .............................. TGCTCCTTGTCCCAGAGGCAGGATTCGAACCTGCAGA 807 30 100.0 37 .............................. ACTAAATCCCCGTCGTTATCATATGCAATCCATGTGA 740 30 100.0 40 .............................. AGATGCTAACCAGCTCATGGTTGTCGCTAATATCAAGCAT 670 30 100.0 38 .............................. TGTGAGCAAACCGGATTACATTTGTCCGGTTTCTGGCC 602 30 96.7 38 ........................C..... TCTGGTGGTTGGCCCGCGGAATCGCTCGCTGATTACTT 534 30 96.7 38 .......................G...... TGAAATAAAGACGAATGTTCGAGACCCTCAACACCGGT 466 30 100.0 37 .............................. ATGCCCCTTTACGGTGTGCCTGGACACATTGATCATT 399 30 100.0 36 .............................. CATGGGTACTGATGAAAAGCAGTAATCGTCAAAGGC 333 30 100.0 39 .............................. CCAAATAATCCTTTTCCAGCACAACACCGCATTCGTCCA 264 30 100.0 38 .............................. TCCCAGAACGCCTGAGCCCAGATTTCGAGACAGGCGGC 196 30 100.0 36 .............................. CCGTACCAGGTCCTGCTGGGTGTCTGTCCAACCATG 130 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 45 30 99.8 37 CTTGTAATTGCACCAATGTGGAATTGAAAT # Left flank : ATACTCTGTCTCACGGCGTGCGAATAACCCATTTGATGTCTCCTCTTTGGGCGCGACATCTATATTAACACATAGGGGTAGTGTCAGA # Right flank : TGGTGACTTGTGAGCGAACATGCCTTCGAGTAATTTCCAAATTTTGTGTTTCAAAAAAATCTAAGCTGCAAGTGTTTCCTCCGTTCCGTCGATAAATTTAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 830-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNY02000013.1 Prosthecochloris sp. ZM_2 Scaffold_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 829 30 100.0 37 .............................. CATGCCCCGCGTCACCTTCCCACGCCCTTGTAGGCTC 762 30 100.0 37 .............................. AACAATTCACCGCGATGCTTGACCTTGTGGCACCTTC 695 30 100.0 38 .............................. ACGGTTGCTAATGATCGAGCCACATCTATTGGTCAGCA 627 30 100.0 37 .............................. TTGATAGGACGAGCGGGTACAAGACTACTTTTGATAC 560 30 96.7 35 .............A................ CTGTTCGTCGGATATTTCGGTTCCGGCAAGCCCGG 495 30 100.0 37 .............................. TCGCAACAATGCAATCCTCCACAATCGGGAGGTTTTC 428 30 100.0 35 .............................. TCAGCCCGAGCTTGTACGCCTTGATTCCAAACCAT 363 30 100.0 36 .............................. GGCGTGGCCAAGCAGACGATACTTGACGACGCGCCC 297 30 100.0 37 .............................. CCAGAAAACGATGCGCTTGATATTGCTGATACCTGAG 230 30 100.0 37 .............................. ATCCCCACGTGCCGTAAACTCGGCTTGTCGGAAGTGT 163 30 100.0 37 .............................. GCAATATGGTGCCCTCTTATGACAAAGCCCTCGATGA 96 30 96.7 35 ...C.......................... AGAGTGTCCGTTGACCTTGCCATCCTGGTATAAAG 31 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.5 37 CTTGTAATTGCACCAATGTGGAATTGAAAT # Left flank : | # Right flank : TA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 48-1414 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNY02000034.1 Prosthecochloris sp. ZM_2 Scaffold_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 48 30 100.0 38 .............................. AAGACAACTAAACAAAAAGCAGGTGTTTTAAGTAAGGA 116 30 100.0 37 .............................. TGCAACTACTCGAATGTACGGGAAATACTCGCCAATC 183 30 100.0 35 .............................. TTAAAGCTATTTCGACAACAGGGCGAGGGCTGAAG 248 30 100.0 35 .............................. GAAGATTTAGCAAATCGTTATGGTGGACACGGAGC 313 30 100.0 37 .............................. AACATCAAGACTTTGAGGATCGTTTGAGCGCATTTTT 380 30 100.0 36 .............................. GCGTTTACAGCGTCCCGAATATCTCGGCGGTGGATC 446 30 100.0 37 .............................. GAGTTTGGCAATGGTTGCGCTTGTATACAAATTATTG 513 30 100.0 38 .............................. ATATGTCCATGAGCTTTTTTTTCTGCTTAAGTTCTGCC 581 30 100.0 37 .............................. GTAATCAAAGATGGCTTATAACGATACTCTGCATAAC 648 30 100.0 38 .............................. GCGATACTTTTAATTTGCGTTCTACTCTTTTTGCTAGG 716 30 100.0 38 .............................. CCGAACTTCACCTTTGCGTCGAGCTTGACCCCGCGGGG 784 30 100.0 36 .............................. TTTGATGATGTTGTAAAGGTTATACGGCATTCTGTA 850 30 100.0 37 .............................. ATGGATATTATAAACCCTAAAGATGTAAATTCGTTTT 917 30 100.0 37 .............................. ATTTTTTCAACATTATTAAACAACGCATCAGTAGATT 984 30 100.0 37 .............................. GATACATCAGCATAAAAACCTTCGTTTTCGCGCATGT 1051 30 100.0 37 .............................. TACCTTATGCAAAACATGTTTGTAAAGGTGAAGGTGT 1118 30 100.0 36 .............................. TAGATTATAGATGTGACGATAGGAAGGAACGTATAG 1184 30 100.0 37 .............................. TCCATGAGAAGGATCAGAATAAAGATATAGTTTCATG 1251 30 100.0 36 .............................. CTTCGAATAAACATCTGCCTCTTCTTTCTGCTTCCT 1317 30 96.7 38 ...........................T.. TACAACGGCATGGGCCTAGCACACTTAAGATTATGTAA 1385 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.8 37 CTTGTAATTGCACCAATGTGGAATTGAAAT # Left flank : GAATTGAAATGCAGATTATACTCTCTTGCGACGCGGCAAAAGACATGC # Right flank : CAGGAAGAAATTCTTTCAATAGCTTGTAGTCGCTTTATGTCAACGCAGATGTCGTGTTTTTTGAAAAAAATTTATTCACTTTTTGTCCGGGTTGAGCACCACTTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 1712-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNY02000035.1 Prosthecochloris sp. ZM_2 Scaffold_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1711 30 100.0 38 .............................. TTGATATGCAAGACGTTTTCCGGCCTAATCTGCTTGTC 1643 30 96.7 38 ...........G.................. ATAGCTCTTTATGCGTCTTATCGCACGCCGCCATGTGG 1575 30 100.0 36 .............................. GTACCATACTGTCCTCCTGGTTGTTGTTGTTGTCGT 1509 30 100.0 38 .............................. GTTGTCCTTGTCCAGCTCTTGCAGCATGTACGGCACAA 1441 30 100.0 36 .............................. CTTCAGTAACCAGTTTGTTTTCGCTGAACTCGATGA 1375 30 100.0 36 .............................. CCATCTCAAGTGCGACGTAACGGAACCCGTTTGCCG 1309 30 100.0 38 .............................. TATAAAACGCAAACAGCTCAGGGTTTTCTTCGACAGTG 1241 30 100.0 38 .............................. ATGCTACACAAAGCGCGGCGATATGATAGATGTGCTGG 1173 30 100.0 36 .............................. TGTTCAACGGCACAAGCCTTGTTTTCCCAATTCCGC 1107 30 100.0 37 .............................. ACGGCATCGGCCTGATCGAGGTTGTCTACTGGCTCGT 1040 30 100.0 38 .............................. ATCTCCGCCCCGTTCCGTCACGGGCCAGACTGGCGATA 972 30 100.0 37 .............................. GACCTCGAGGCATGCCGCCTCGAACCGGTCAAGCGTG 905 30 100.0 37 .............................. CGATAACTTTGCGTAAATCAAGGACTTCCGTCTGTCG 838 30 100.0 36 .............................. CTGTACTTCCATCACGTCCTCGTCAACAAACCATAT 772 30 100.0 37 .............................. CCGGGATCGCCAGAGCCGTGTTTCCCCACTCTTGCAG 705 30 100.0 40 .............................. AGCCTTTAAACCACATTCCGAATACCAGATTGGCGGGCGA 635 30 100.0 37 .............................. CAGTTTCCGGATATCGCGCACAACCTCTGTCTCCGCG 568 30 100.0 38 .............................. TTTTTTAGCCTGTCTATGATTTTATTCACGTTTTGTGA 500 30 100.0 37 .............................. GCGGATCAGCGTGTTGAAGACCTGTTCGGCGAGGGCC 433 30 100.0 37 .............................. TATCCTCCAGCCGCTTGCTCCTGTTGCGTACATGGAT 366 30 100.0 37 .............................. CGGTTTTCGTATACTCAACAGCTTCGGCCACATAATC 299 30 90.0 37 .........T....G.....A......... TCGATCACCCTGTACGATATACGGGCTTCCGGCAGGC 232 30 100.0 37 .............................. AGCATCTCCCTGATCTGCAGCCTTGCGATACCACCTC 165 30 100.0 38 .............................. GGCTGATGCTGACAGCGGGCTGGCTGAAATTGACCTAT 97 30 96.7 37 ...................A.......... GTGTTGGCGGCAGTTGTGCTCAGGAGGTTGCGGGCGA 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 26 30 99.4 37 CTTGTAATTGCACCAATGTGGAATTGAAAT # Left flank : T # Right flank : T # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 7032-7460 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNY02000065.1 Prosthecochloris sp. ZM_2 Scaffold_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7032 30 100.0 37 .............................. ATGATATCGATGACGACGTGATCGAGGTTTTGTTTCG 7099 30 100.0 38 .............................. ATCAGCCGCCTGCAGGCAAAACAGCGCGGCATCACCGG 7167 30 100.0 35 .............................. TCCTTAGCTCGTCTTGGTGAACAGGAAGTCCTTAA 7232 30 100.0 37 .............................. TCGATGATAACTGGAAAAATGAGGTCTACAGATCCTC 7299 30 100.0 36 .............................. TAACAAAGAAATATACGCACAGGGCACTTCCGCGGA 7365 30 100.0 36 .............................. AAGCCAAGAAGACCACCAACAAGATCACCAGCAAAA 7431 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 37 CTTGTAATTGCACCAATGTGGAATTGAAAT # Left flank : ATCGGATAAGATGGAAGAAGCCCATCTCTGGCAGCTTAAATATTATCTGTATTATCTTAAAATATCAGGAGTGGTGGATGTTACAGGAAGGCTTGACTACCCGAAGCTCAAGAAAACTCTTCAGGTTGAATTAACAAAAGATGACGAGCAGAAAATCCAGGGGGTTTTCGATGATATGACGGTCATTGTACATCAGGAAGCCCCTCCAGAGCGGATCAACAAAAAGTTCTGTAAATCATGTGCATATTATGAATTTTGCTGGGCTTAGCCTGTCTATGTATTGAAAAAGATGTCGTCGGGCAGCCGAGATAAACCTGTTAGAGAGCGGAAAACCTGCCGAAAAAACCAGCTTTGTTTTACTATCTGCAATGAAAGTAATAAATTAAAAATGTCGTCGGAGTCCCGGTTTTTTTCGGTTATCACAACGTGACGACAAATTTCAGCGATTTTAGTGATCAGACATCAATAAAATCGCCCTTCTTCAGCCGTTTACCTCACGG # Right flank : GAACTCTCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //