Array 1 218439-216698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESW010000002.1 Salmonella sp. 32020501-2015-00069-FB-01-SM-01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218438 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 218377 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 218316 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 218255 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 218194 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 218133 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 218072 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 218011 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 217950 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 217889 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 217828 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 217767 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 217705 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 217643 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 217582 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 217521 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 217460 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 217399 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 217338 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 217277 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 217216 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 217155 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 217093 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 217032 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 216971 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 216910 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 216849 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 216788 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 216727 29 93.1 0 A..............A............. | A [216700] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235796-234609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESW010000002.1 Salmonella sp. 32020501-2015-00069-FB-01-SM-01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235795 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 235734 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 235673 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 235612 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 235551 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 235490 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 235429 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 235368 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 235307 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 235246 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 235185 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 235124 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 235063 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 235002 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 234941 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 234880 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 234819 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 234758 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 234697 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 234636 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //