Array 1 129929-129570 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFQF01000003.1 Clostridium botulinum strain SU0729 U21312_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 129928 29 100.0 38 ............................. ATTTCCCTCAATATTTTAGTTGTTTGGAATAATAGTAG 129861 29 100.0 37 ............................. TATTTAATTTACTTTTTTTAAATTTCCTCCCAAACTG 129795 29 100.0 38 ............................. TTAATTAGTGCCATTCCTGCTGGGGAGTATTGAGTTCG 129728 29 96.6 37 .......A..................... ATAGAAAAATTATAGATATCCAAATCTATTATTTTGA 129662 29 96.6 35 .......A..................... AACCAAAACATTTTACTTCCACAACATGCATCAAA 129598 29 89.7 0 ..A....G......A.............. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 97.2 37 TTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTAATAATTAAGATATGAATAACTTATTAAACATATTATAGTATTTAAATTGAATTTACAGTATCTTTATGTTGTAATACAAAATATGATTTATGGATAACATGAGATGAATCTAAGAAGAGAACAAAAATTCTTTTATCTAGAGTTAAGTCTTACTCCTTTAAATATAGGAGCAGGAGTTTTATTATTTTAACTTTAGTTTATTAATAGTGGAAGTAGAAGAAAACTATATGGGTATAGAAAACAATAAAAAAATAACAGAGGTTTATTGTTAGAATAATATATGAAAAATGAGTGAAAATAAAAACAAAACTCAAAAACTTTTTCCAACCAATTTTAGTTTTGAAACCTATATTAAGCGTTGAAATATAAGGCTTAGGATAGGTTTTGTTTATATTTTTATAAAAAATAGTAATTGGTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGCCTATATGCTATCCTTAAAATTAAAGAACGGCTATTTTACTATGG # Right flank : CCAATCATATATATTTTAGTCTTGGTCCATTTAAATTGAACATTAACATTAGATGGTGCTAGTATAGTATTGTAGACACAGAAAGCCGAGCACATTACAATATAAATAAAAGAAGGATCTGTTAGAAATGGCAAAAGGTCAAAGCGATATACAGGGGAATTAGAAAATAAATAATACAAAAACTAAATGTTTAATAGTTTTTACCCTATAGAAAGAGATGAATTCTATAAAAAAGATAGATTGTATGTTTTTAGAGTTAGAGAATTAAGTGAAGAATTTATAAAAATTAAATGATTAAATTTCTTTTCATACAAGAAAAGCTTTAACTTATTTGAACTTTATAAGCTATGAGGAGGTTTAATATGGCATTACCTAAAATAACCCAAGAGAATGTACACATATTTATTCCACTTAAGGCATCAAAAATATCATATAGATTTGCTAAGGAACATCATATATCTCAAAAGCAAGCTTTATTGGAGTTTTATAATTCAAAAACC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : TTGAACAATAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 142892-142534 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFQF01000003.1 Clostridium botulinum strain SU0729 U21312_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 142891 29 93.1 38 .......G......A.............. GATGCTACGCAGGTAGTAAGTAAAGATGGCTTTGGAAG 142824 29 93.1 37 .......G......A.............. CCAACTTCTCTTGTTGTTTCCTTACCACTTATAGGCA 142758 29 100.0 38 ............................. ACTTTCTAGTCATATAAATCATAACGAAAAAATGCAAA 142691 29 100.0 36 ............................. AAGGATAAGGTTGCAAAAGAATTTAATAAGTTACCA 142626 29 100.0 36 ............................. ATGGTTTTGACTTCCATAGAAAAAACTGAAAAGCCA 142561 28 86.2 0 .......T......A......G..-.... | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 95.4 37 TTGAACAATAACATGAGATGTATTTAAAT # Left flank : ATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTGTACTAAAAATAGAGGAATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAACCAACTTTAGCTTACAAACCTATCTTAGCTCTTGAAATATAAGGCTTAAGGTAGGCTTTTCTTATATATTTATAAAATATTATAATCGGTTGGAAAATTTTCTTTAAAACCTTGTAAAACCAATGTCTATGTGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATGG # Right flank : TGGGATATGATTTTTACATTAATTAAATAATAATCGTAGTTTATTATAAATAGTATGGAGGTAGATTTTGAAGCTTAAAGTAGTATTTTTAATTAGTCTTATTATGTTTATTCTTGGTGTATACTTTTCCAATAAGTCTAATTTTATGATTTTAATTGGAATATTAGGTGGAGGAATAATGGGATGTGTATCAGCATTTATAGGATATTCTAGAACAAATGCTATTAAAGATAAAGAGACTAGTGCATAAAAGAATTAATTTTTTATTATCTCATGGATTAGGCATGTGTTAAAGTTTTCAATATTAACATAAGCATTAAAAATTAATATTATATATGATAAAAATTACTAGAAGTCTTAGAAAAATCTAAGGCTTTTATTTATGCAAAGATTTAGAATGGAATATGATAGGTAATTAATTTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATTAGTTATAGTAACTAAAGGGTGTATGGTATAATAT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : TTGAACAGTAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 144555-143804 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFQF01000003.1 Clostridium botulinum strain SU0729 U21312_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 144554 30 100.0 36 .............................. AATTTTGTTTCTTTTGCATTGAGTTCATTTTGTTTA 144488 30 100.0 35 .............................. GTATCTTCTATGCACCATCCAACAAATCGTTCTTC 144423 30 100.0 36 .............................. TCGTTAGCCTTCTTAAAAGATAGTTCTTGGGATTCG 144357 30 100.0 36 .............................. CTAAATATCAAAGGCGAACCTGCTTGTGGGTTTTGA 144291 30 100.0 36 .............................. ATTTGTATGTCTTGATTAAAGAGATTATTAATTCTT 144225 30 100.0 36 .............................. TTCATTATTATAAAAAGTTCCTCCTTTCCAATTTTA 144159 30 100.0 35 .............................. ATTAATAAGTTCTAGGAAATGTCCTAATTGTGGAT 144094 30 100.0 34 .............................. TCTAATATTTCTTTTAAATTTGTATCTTCTGTTT 144030 30 100.0 36 .............................. ACTAATGAATTAAATCTATCAATTATGCTTTGCTCA 143964 30 100.0 35 .............................. AAAAAGATAAGAGAATACAGAAGTTTAAGAGATGC 143899 30 100.0 36 .............................. TATAAACTGTATTTAACGATTTTTTAATTAATTATT 143833 30 90.0 0 .......................C.G...A | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 99.2 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : TATTTACAAATTAAAATTATTTATGCAATGGGAAGAGAAAATGATTTTGGCCATTGATTGTTTGATATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATATATAGTATTTAAGCAGGGAACCCAAATCTTAGATTTGGTGTGAGTCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAAACTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGCTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAACATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAGAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAGTTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //