Array 1 29-5556 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJP01000004.1 Sulfolobus islandicus M.16.30 contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 29 24 100.0 39 ........................ ATATACTCGAATCCTACATCAAATCGATTTAAGTTTTCT 92 24 91.7 42 ....................T..A GTTTTTTACATTTTTTATAGTCCATCTTAACTTAAGTTCTGT 158 24 100.0 39 ........................ TTAGTTCAGTAAACCCCGCGGGGGGTTCCCCCACCCCCA 221 24 100.0 40 ........................ TTAGTAGTTAGACAGGCAGAATCGGGTTAAGGGCGTTAGC 285 24 100.0 42 ........................ ATCATAGTTTTTGCAACTTCTAAGTAATTTATGTTCTCTCTG 351 24 100.0 36 ........................ TTTTACTCACCTAGTTTGTACAAAATCGAATCCTGA 411 24 100.0 39 ........................ GAATTGTTTCGCGACAAGGACATATGCTAACCTATCTAT 474 24 100.0 40 ........................ AAAAGTTCTTGGAAAAGTAACGTAAACAGATATATTCCGT 538 24 100.0 40 ........................ TGATTATTAATATTCTGTCCTCCTCTTTGTCATCGGCCCT 602 24 100.0 41 ........................ TGTTTTAATTAATGAATCTACCCATTTGATTATCATCATAA 667 24 100.0 38 ........................ ATCAGTCGTGACTATTGTACCTCCTTGGTAGTAGTTTA 729 24 100.0 38 ........................ TATATGAATCTGATTGCATGTTCTGACATGTCGGCCAC 791 24 100.0 39 ........................ ATTGTAGGTTTAAGTGTCCTCTTGAACTGCTGGCTTTCT 854 24 100.0 40 ........................ TATTGCTGATGAATTAAACGTCATTATACTATTTTTGCCG 918 24 100.0 39 ........................ AAAACATCGTCATACACAGTATTAGTCCAACCTAATGTA 981 24 100.0 42 ........................ AATTTCTCATAATGAAGTCATTTCTATCTATAATATTCTCTC 1047 24 100.0 39 ........................ GCAGTTAAAACGATACCAGTCCCTTCGCCCGGAATTGGA 1110 24 100.0 39 ........................ GCCATGACATACGCAGTACTTGTTGTTGTAACCGCCGAA 1173 24 100.0 38 ........................ AATGCAGCAAAAGAACTCATGTAATAAACAGTAGAACT 1235 24 100.0 37 ........................ TCTTTCACAACGTGGACATTGATATAATAACGCTCCA 1296 24 100.0 39 ........................ ATTTTTTGGTTTGAAAAAACACTTTTGTTACCTTTAACA 1359 24 100.0 38 ........................ TCGGTTATATCTTCAGTAGGGGGTTTTTACTAAACTTA 1421 24 100.0 36 ........................ CATTCCACCAACATCGTCCATTGTTATCGATGGTGT 1481 24 100.0 36 ........................ CAGCACGCTGGAAGCTAGGGCGTCAGCCTAAATACA 1541 24 100.0 34 ........................ GTCTAGTTTTTGTGCCCCGTTATTTTGCTATGAT 1599 24 100.0 40 ........................ CTCTATTTCTTCTTCGAATTTCCTTAGTGTGTAATCTTCA 1663 24 100.0 42 ........................ TACTAGAAATCCCGCCACTATTCCTATGAAATTAGTTAGCAA 1729 24 100.0 38 ........................ CAAACTCAGCGATAAGCAAAAGTTTAAAACAGCTGTTT 1791 24 100.0 38 ........................ ACAGCTTCTCCAGCAGGGCAAATACCAGCAGGCATTAC 1853 24 100.0 40 ........................ ATGTTTGGTAAGTTTAGCAAGGCAAGTTTGGTTCAGCAAG 1917 24 100.0 37 ........................ AGGTTCTGTAGTTCATAATGAAGAAGCTTATAATATG 1978 24 100.0 39 ........................ CATAGATTCTCATAGGCAATATAGCTACTTTGTCATCAT 2041 24 100.0 39 ........................ GAAAAATAAAAAAGCTTTTTAGAAATATACTTCTAAATA 2104 24 100.0 45 ........................ AGCAGTTAGAGATATTTCAGCTGAAGGAAACGCTGAGAAAGATAT 2173 24 100.0 39 ........................ TTCTGTTTATGCAGCGCAGTAACGAAGTTCACCATTCTG 2236 24 100.0 37 ........................ ATTAAGTTCATCTAGATGATATATAGTTTGTGCTTTT 2297 24 100.0 38 ........................ AGAGCAGTTAGACCAATTGTACCACTCCATTCAAAAAT 2359 24 100.0 39 ........................ CGATGATTTCCCCTACGTTCATGGTAAACATGTTCAAGC 2422 24 100.0 41 ........................ GGTTGTAAATACGCCACGTGAATTGGAGCGCTAGACGCGGG 2487 24 100.0 38 ........................ TTGGCTGGAACCAGATATTGCTGAGGTAAGCTAGTTCC 2549 24 100.0 40 ........................ AAATTACTAACCTTACTATCAATTTTTTTAAGTAAATCTT 2613 24 100.0 44 ........................ ACATCTTTGTGGCCGTGAACTTCCTCTAGATATTTTCGGGGCTA 2681 24 100.0 38 ........................ ATACCAAGGCTGAATGGAGGCCTAGAGTAAACCCCCCA 2743 24 100.0 39 ........................ TTCAATGTTAAAACTGGAATAAATGGTGTTGAATATCCT 2806 24 100.0 38 ........................ TCTGATCTGTTATCAGGTCTAATGAGTATTTGGCCTTA 2868 24 100.0 40 ........................ TTGCATAATCTTTTCTGAATCCTAATGCCATCTTTTCCTT 2932 24 100.0 40 ........................ ACAATCCGCAATTAATTCTTTACATTCCTCCAAATATTTT 2996 24 100.0 37 ........................ TTCTTGAGCTCATAAATCGGGCTGAGGTCCTCATAAT 3057 24 100.0 40 ........................ AAAACCGGGATACGAACGTGTTCTCTACAGAGGTAATGTA 3121 24 100.0 39 ........................ ATCTTTGAAAGATAATTAATAAGTAGCTCTAGATCCTTT 3184 24 100.0 38 ........................ CTATATCTCCCTAAAACATCGATACATTTCCAGAAAAC 3246 24 100.0 39 ........................ ATTATATTATCAAGACCTTTAGGTGTTGTGTATGAGATA 3309 24 100.0 40 ........................ AATGATTGAACTACTAAAGTCAGTGGCGGAACTGCAGGCT 3373 24 100.0 41 ........................ AACGGTGAAAGTGCTACTTTATCATACGGGCAAGCATTAGA 3438 24 100.0 38 ........................ GTAATACTCAAAGTGTTTATATAACACGTGAGACGCAA 3500 24 100.0 40 ........................ GTAATGATGAACTTTTACAAAATTCCTCATTGTATTAGCC 3564 24 100.0 39 ........................ GTAATGATGAACTTTACAAAATTCCTCATTGTATTAGCC 3627 24 100.0 41 ........................ AGGTGTATAGGTGACATGTGATATCTGTTCCTCCTCCTGAT 3692 24 100.0 38 ........................ TTTCAAATCATTGTAGTCCCAAATAAAGGGTATTTTTG 3754 24 100.0 40 ........................ CGATACTCGAACGGTTGCGTACCCCAAGGACGTAATTCTA 3818 24 100.0 41 ........................ GTTTCCATAAGATATCGCAGAATAAATGGCGGTAATGGTCT 3883 24 100.0 40 ........................ TCTAATAATACTAATAATAATCAACAAACTCAGACTACAT 3947 24 100.0 38 ........................ TACGTAACGCGTATAGTGACGTCTTCATAGTCGCCCAT 4009 24 100.0 36 ........................ TAATAATCTGTAACGCTTACAGTTATCTTAACTGGA 4069 24 100.0 38 ........................ CATAAAGTATATGTGCTGAAGTCTTCTTTGATCCGATA 4131 24 100.0 39 ........................ AAGATAACACATTTATTTTCTACGTAGTACTTACATACT 4194 24 100.0 41 ........................ CTTATTCCCGAATGATTTCTTCCTCCTATAGATTTCCTCAA 4259 24 100.0 38 ........................ AAGACTTAGATCATGGTGTGATACATCAATATTTAGGA 4321 24 100.0 36 ........................ ATACCCCTACACTGGTATATATTCAGCCGTATATAG 4381 24 100.0 38 ........................ GAAAGCGTAAAGATGAAGTTACTAGACGAAATCAAAAA 4443 24 100.0 40 ........................ ATACCTTTTTAACGTCGGATACCATAATCATTAATCCCGC 4507 24 100.0 42 ........................ CCCATGATTTTCAATTCACCAATTGTACAAAAATATATTCTT 4573 24 100.0 42 ........................ AACGATGCTACCGCATTTGTTAATAAATTTCCTAAGTTTTGT 4639 24 100.0 40 ........................ CCTACCGTGACTGCGACATAATGGGGTATTATTGCATAAT 4703 24 100.0 38 ........................ CGCCGTCGCCGACGCGGGGGTATGTAGTCAGTATTACT 4765 24 100.0 38 ........................ GTAGACGCTACTGCATTAGGCATAGGTGTTATAAACGT 4827 24 100.0 40 ........................ AGATTTGTCATTTGAATTATATAACTATGAGTAAATGTTA 4891 24 100.0 40 ........................ GAAGGCAGTGCAATCTTATATGTGTTCCCTTTTTCTTTTG 4955 24 95.8 42 .T...................... AATCAGGGGATGATACTAGTTTTCACATACAACGGACAGTCG 5021 24 95.8 37 .T...................... GCTTTCTGCCGAACTTTTCAGCAGTCATTATAGCTCC 5082 24 95.8 40 .T...................... AGTGTTAGTATAAATCGCGAACAAAATAAGCGGATAAAGA 5146 24 95.8 41 .T...................... GTTACGGGTACTGTTTGTGTATAATATGAGGGGTAACTCAT 5211 24 95.8 40 .T...................... TGTGGCAACACAAATATAGCTTCACAGATAACATCCCTTT 5275 24 95.8 40 .T...................... TGGAAACCGCTCACGTAAACACTTATAAATCCATTCTCTT 5339 24 95.8 41 .T...................... ATTAGTTTTATTAAATGATCCATCAATTCAAACTTTGACAT 5404 24 95.8 41 .T...................... ATTGACTACATTCAAGCCACCAACGGTAACGATAAATTTAC 5469 24 95.8 40 .T...................... TTTCATGTTTTTGTTATCATTCAATCCTTGGCAATTGAGT 5533 24 95.8 0 .T...................... | ========== ====== ====== ====== ======================== ============================================= ================== 88 24 99.4 39 GATAATCTACTATAGAATTGAAAG # Left flank : GTACTCGGTTCGGTACGTCATGTTCAACG # Right flank : GAAAATTAGTATAGACTAAATAATTTTTAAATAATATTAAAAATAGACAGTAAATATATATTTATTTAATGTGTATTTAAAGGTTTTCCTTACTTCGGAAAAAAGAACATCTATTTTTCGTAATACGTAAATACTTTTATGTAAGCTTATTAATAGATTTTATTTATGAATCTATTGCTCGTTACAATCGGTTTTGACGAGAAGTTTCAAATAAGAGCACTTATGAGGAGATTTAAGGAGATAGATAAGGTTGTTATTGTCGGCTATTTTAATGAAGAGAGGGCTAAAAAGGCTTTAGAGTCCTTTATAAATGTCATAAATACAGCTGGCGTTAGTTACGAATTATTGGAAGTTAATCCTTATTCTTTTGATGATCTAATCGTGAGAATTTCAAAGTTTATAAATAAAAATAAGGGAAATAGGTTAATAGTGAATTTAAGTGGTGGAATGAGGATTTTAATATTAGGTGTTATACTATCCTTTATAATTAATGGTGTTGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-90.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.68 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 918-62 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJP01000003.1 Sulfolobus islandicus M.16.30 contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 917 24 100.0 39 ........................ TAATTAATGGTCTTAATTATGACGTAAAAATAGGCCCAG 854 24 100.0 39 ........................ TTTACAGTCCTTTCTTCCACCTTATTTAACCATTTTCCT 791 24 100.0 37 ........................ TACTTCCATTATCATATTGAGCATAATTGGATGTCAA 730 24 100.0 40 ........................ TCATCTATAGCTTTTTGTATTAGACTTTTAATTTCCTCCT 666 24 100.0 40 ........................ AAAAACTTTGCTGATGAGGAAATAACAGATATTAAACTAT 602 24 100.0 40 ........................ CTACTTACCAATTTCCTTATCGCAACCGATCCTAATGGAA 538 24 100.0 41 ........................ TATTGTAGGTCATGAAGCGACATGTTACGGAATTTCTAAAG 473 24 100.0 39 ........................ CCACATCAGCCTTTCAAGCCTTGACTTAGGCTGGTCTAC 410 24 100.0 43 ........................ AACGCTATAAAGTCCACTGCCAAGGTAAATATTACTTCTTCAC 343 24 100.0 40 ........................ TGGAAGTGTAACCGTCTGCCCACTTATACCTGTATAGTCA 279 24 100.0 38 ........................ AGTGAAATATACTTTGCTATTTCTCCGAATGCAATAAA 217 24 100.0 40 ........................ CATGCATTTTATAAACCATAGCAACTGCATTTATTAACAT 153 24 100.0 44 ........................ AGGACTTTAGTCACGCTTTCTCTTATTTTATAACGTAAACTCTC 85 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 14 24 100.0 40 GATAATCTACTATAGAATTGAAAG # Left flank : GCTTTATTGGGGGCATATGATAGTTCCATCCCCGGAGCTCCTCTTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTTCGTAACTGTCTAATTATCTGCGACCTCATAATATAATAGTAGTTGAAAAATCTAAAAACCGTTTTAAGGAGTGGGGTAAAGACATTCCCAAGTTTACTAGGGATTAGCCTAGAATTCTGAGTGCCATCTCTATATAAAGAGCAATAATAAGATTAGGGAAAGAGATTACTCTACTGTTAATGGAGTTGTTTTGTGGTTTTGTATTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTATGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCA # Right flank : GAAGTAGATCGTTCTTGTCTGGTTCGGTCGTTCATGTTCAACGAGTAATCTACTATAGAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 5514-7514 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJP01000003.1 Sulfolobus islandicus M.16.30 contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 5514 24 100.0 39 ........................ AAAGCTTCTTGAAAAGTTAAGCCATGCGTAATTTTTAAT 5577 24 100.0 38 ........................ TTAACACTTAAACTAGAATTATCATCATCAATAGATAA 5639 24 100.0 39 ........................ ATTCTCAAGGAAACCAAAAGTCTTACCTGCGGAAACTAT 5702 24 100.0 39 ........................ AGCTGGAGGAAGTGAAAAATGGACAACGACAGTAAGCTA 5765 24 100.0 37 ........................ TTTATATCACCTCCTAGCATATAATGATACTAAATAA 5826 24 100.0 41 ........................ TTGTATTTATGTCCTCCCCACTCATATAGTATATATTCTCC 5891 24 100.0 42 ........................ TGTACCGTTACCTTGATTTGTTAATTGTATCGACTGTCCAAA 5957 24 100.0 38 ........................ TTTACTGACATATACCTATATGATCCTTTAGAAGTGAT 6019 24 100.0 39 ........................ ATTAACTGGTGGTTGGAAGAAAAACTATCGGCACTTACA 6082 24 100.0 41 ........................ TCAAATGTACCCCGCAATATCCTCTTTCCTACATTCACTTC 6147 24 100.0 39 ........................ TAATAGAATATTTCAATATTGCACTCAGTGCGAATACGC 6210 24 100.0 41 ........................ AAGCATATAGCTCCAGAGAAATACACATTGAAAATTGATTT 6275 24 100.0 39 ........................ ATCATACTTCATTCTTCCTCATCCTCCTCTTTACATTTA 6338 24 100.0 39 ........................ CTCTTTTGTTAAACATGTTTTTCCTAAGCGTATTATAAT 6401 24 100.0 41 ........................ ATCCTTAAAGTTAGTCTGTATCAATAGATTGTTAATATCTT 6466 24 100.0 40 ........................ TACATGGGCTACAACCCATACGCTTACGGATTAGGACAAT 6530 24 100.0 40 ........................ ACAGATGTAATAGATGTTTCATGGCAATCCCTCTTAGCAG 6594 24 100.0 39 ........................ TTAAATGATCCAATAGGATTGTAATTGTTGTAGAACCAT 6657 24 100.0 41 ........................ ATAAACTATCAACTTGTACAATCCATATATTTTAAGGTAGC 6722 24 100.0 40 ........................ CCTTCTCAGGTGCATTTTTCTCTTTCCGCAGTCTCTCTAT 6786 24 100.0 40 ........................ TCATCTAATGAAATTATATAAAAATTCTGCAAAAATGAAT 6850 24 100.0 40 ........................ AGAATTGATCCCATGAAAATTCCAGCTAACATATATATTA 6914 24 100.0 38 ........................ ATAGTCTGTCTCACCTTGATTATTGCTTTCTCCTTCAT G [6924] 6977 24 100.0 41 ........................ GTACCCCTTTAGCACTAGATATAAATACGATAGAATTTCCG 7042 24 100.0 39 ........................ TTCAATATACCTTTACCTTTAGATCTTCAGAAAATAGTA 7105 24 100.0 40 ........................ TAAGCTAAAGAATGAGTAGCTAATACTATAAATTGCTTAT 7169 24 100.0 40 ........................ CTAATAGGCAATGTTTCGGGAAGAAGATTCGCACATATAG 7233 24 100.0 38 ........................ GTAACAGGGACTTTGGACATTTAGTCAGCGCATCCGAA 7295 24 100.0 44 ........................ GACCTAGGGGAGGATTATCGAAGTAGTGAGGATGAAAGTCTTAT 7363 24 100.0 38 ........................ TATCTCTTATCTTATGTCTTCCAAACGCCAGAAATCTT 7425 24 100.0 42 ........................ AAAGTATAACTAAGTTTTATCCACTTTACTTTCTCTTCTCCC 7491 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 32 24 100.0 40 GATAATCTACTATAGAATTGAAAG # Left flank : CTATTTCATAAACTTTTGGAAGAGGGTAGTTTAACCTTGAAGTTTGAGCTCTTAAGCTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAACGATTACAAGATTATCTTCTTTCTGTGCAGAGGTTTCGTTTAGAAGTCTAAGCAGAAAAGTTTCATTAAATCCCATGGTCACAAAATATGATTTCATATCATAAAATTGGTATTACCAACTCATAAATCTTTCTATAACTTAAGAGCTTGTAGCTGAGGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAAAGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCA # Right flank : AAAGATCAATTAAAGGAGTTCTTTGAGTGGATAGAGAAAGGATAATCTACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 4-611 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJP01000002.1 Sulfolobus islandicus M.16.30 contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 4 25 100.0 39 ......................... TTATATACATTAGTTGTAGTATTGACGATTAGTTGTACT 68 25 96.0 38 ..G...................... GTGTAATAAAATATCTATATAGTAAATTAAAACATCAT 131 25 100.0 44 ......................... TTATACTTTTCTAAATTGCTTTACTGAATTCTTTTCTTTTCTTT 200 25 100.0 41 ......................... ATAAACTACGTTCTAGGAAAAGAACCACCCTCTAAACCTAA T,A,T [201,205,211] 269 25 100.0 38 ......................... ATTCAATATTATGCATTTCCCCTTACGTCCCCTCAAGT 332 25 100.0 40 ......................... GCAATGTTATCAAGATGATAGAACTTATTATTTATTTCAT 397 25 100.0 38 ......................... AAACAAGAAGAAAAAGAAGTAGATGAGTTTTTTTATTT 460 25 100.0 37 ......................... TCATATTATTACTACTTGCGGTAACAGGGCTAAACAA 522 25 100.0 40 ......................... AACATGCTCAAAGCAAGTGATGGGATGATTACTAACCTAC 587 25 88.0 0 ...C.....C....C.......... | ========== ====== ====== ====== ========================= ============================================ ================== 10 25 98.4 40 GATTAATCCTAAAAGGAATTGAAAG # Left flank : TCTG # Right flank : GTAATAAACGATTGTTTGACGACATTATTTACAGGGAGTGTTCTCGTGCAGTCATCTTATTCGAGAACATATAGTAAAATTATATCAGATTTTGTCTAATATTCTGTACTCCCTTCCGGTAAGCCTCATTCAAGGGAGATGACTCCCTTGAATAGATTACGGGATAAATGACGTTCAACAAGGCAAGACTATAATCAACCATCCTCCCACTCCTGCTCACAGCCCTAGTATCCCTAGCTAACCTAGCCAAGTGGGCCCTACAGTAAGAGTTATAACTCTCCACGGTGTGAGTGTACTTTTTGCTCGCAATATGATTATCAAGAACTTGATAAACAGAGTAATCATCAGTATAATTAACCTCACTCTTAGGCAGAGAACTCAACAGAAAGCTGAAAGTCTTGTAATCTCTATTACCCGTAGTAAAGAAGGGTAGACCATCAACCAAAGCATTCCAAATCTACACCTCTTGGGACCATGTCTAACTCTAAGGTAAGTCCAAC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 19289-18824 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJP01000002.1 Sulfolobus islandicus M.16.30 contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 19288 22 91.7 41 --...................... TTTGAAAGTATGTATCAGTTCGAGATCATAGAGAAAGCTGT 19225 24 100.0 40 ........................ AATTGCAAACTTATTGGTACTTAAAGCCCTTCATAAACAT 19161 24 100.0 39 ........................ ACGAGAGTGTTAGGATCTTCCCATCCTACCCCTAACGGG 19098 24 100.0 41 ........................ TTTTAAACAAAATAAACTGTCCATCCTTCCTCACATTTCTT 19033 24 100.0 37 ........................ TTGGTAACCTCATCACTCACCGTTGTTAAAAATACGT 18972 24 100.0 38 ........................ TGACGGAGGGAGGTGGATAATCACTGCCGTCCTATACG 18910 24 100.0 39 ........................ CTCAAGGCAATTATAAATGAGGTGTCGACCAAGGTACCT 18847 24 95.8 0 ........T............... | ========== ====== ====== ====== ======================== ========================================= ================== 8 24 98.4 39 GATAATCTACTATAGAATTGAAAG # Left flank : | # Right flank : TATACTATATTCTATGACTTGTTTGAAATCTAAATCTAGGGAAGCCGTATGGAAAAAGACGAAGTCCTAATAGATATAAGTACGTTTATATCGAATAAGAGAAGAAAGGGGAAAGTTAGTGTAGTAACGCTAATAGAAATTATAGAATGGGCTTTAAGGAAGTATAATGAACATAGTAAAAAAGGTGATAAATTGAGGGCTTTAGGTTACCTAAATCTCATAACCTCACTTCCGCTAACTGTTGATGAAGTAATTGAGATAAGAGGTGATGAAATAAGAGATCTAGTGTATTACGTAATTGAGAAAAATTTAGATCCTACTGATGCTTATTTTGTAGTTTTAAGCAAGAGGTTTAAGATGCCTATAATTACAACGGATAAGGATTTCGAAAGGATTAAGGATGAAATAGAAGTTATATACCCATGAAATAACGGTTATGTAAAATCTATGCTTTGTGGGCTATATTTTATGATAGCCAACTAGAAGCATAGAGGTATAGA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 863666-864398 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJP01000001.1 Sulfolobus islandicus M.16.30 contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 863666 25 100.0 39 ......................... GCTTTTTTAATATAAAATCAGGGGAAAGCGGAATGAATG 863730 25 100.0 38 ......................... ATTTTAATTGAAGTAAACCCTTCTTCAACTTTATCTTC 863793 25 100.0 37 ......................... TCAAAAAATTATTTTCTCTATTTTGTGAAAAAGTTAA 863855 25 100.0 39 ......................... GCATAATAATTTAATAGATCTTCTAAGCCGTCTAAGATC 863919 25 100.0 42 ......................... ATAACTAATCTCTCACATATTTCCCTGCCCAACATATCCCAC 863986 25 92.0 43 .....................G..A GTTTCATCTATACTTACTTCCACAATATTCCCTTTTGGCACAT 864054 25 100.0 42 ......................... TAAACATATCTAAGACAATNACTCATGTAGCAGTCTAATTAG 864121 25 100.0 37 ......................... TTATTTCTTAGTATGATTTCTTTTAATTCATTTCCAT 864183 25 100.0 40 ......................... CCAAACCTGATTCCAGTGCAAGACCTCCTGCTTCTCCTAT 864248 25 100.0 38 ......................... TTTTATCAATTCACTCTTGCTTATCCCTAATCTTTTTG 864311 25 100.0 38 ......................... AGTAATCGGGTTCGGGTTTGCTATCGGTCTTTACGTTC 864374 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 12 25 99.3 39 GATTAATCCTAAAAGGAATTGAAAG # Left flank : AAAGATAGATTAAAAAATTAACCATAAAAGAGTTCCTTATTTTTTGATCGATATTTATTTTTTATTTGGTTAAAAAGTTTTTACTACTACATTTCTGGATCAGACGTGGAATTAACGTGATTATAAGTCCCTTTAAAAGGATAGTTATGCGTTAGAATGAAAAACAATTATACTAAGAAGCGCAGTTACTAAATTATTGTTTACCATCTCTAACGATTTTATAATGATAGAATGACTAAGATGTTACCTAGAAGTTCGTTCTTATGAAGTGGTTTAAAAGTGTCGGAGTTCGAGTCTCAATGCGACCGAAACGAATCTTTTTCGTATAATTGAACGTTTATAAATAATGGGGTATATTTCAATTGAATGGTAAATCCTTGCGACCAAAAATTGTTAAATTAATTACAACTAGAATCGGTCGCATGAGGAGTAAAGGATAATAATGAAGATTTATAAGCAAGAAAGGAGTAAAGTAAGATAAGAAGTATAAAAACACAACA # Right flank : CTCTTCTCCTTTGACTTGTAATACTAATCAATGACCTAAGATTAATC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //