Array 1 311049-312095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTD01000006.1 Pseudomonas aeruginosa strain AZPAE14885 AZPAE14885_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 311049 28 100.0 32 ............................ AGTATGCCGCCGCAATCGGCGGAAGACCGATC 311109 28 100.0 32 ............................ AGAGCCGGATCACGCAGCGGATAGAGCAGCGC 311169 28 100.0 32 ............................ TGGAACTCACCGAGTCCTCGACGCTCACCCCG 311229 28 100.0 32 ............................ ACCAAGGACAACCGTAGCCTGATGGACGTTGC 311289 28 100.0 30 ............................ ATGGGAATGCTCTCCTGGCACGAAGAAACG 311347 28 100.0 32 ............................ GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 311407 28 100.0 32 ............................ ATGCTCATTTCGCCACCTCGATTCCGGCTTGT 311467 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 311527 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 311588 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 311648 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 311708 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 311768 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 311828 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 311888 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 311948 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 312008 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 312068 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.4 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGAAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22-889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTD01000074.1 Pseudomonas aeruginosa strain AZPAE14885 AZPAE14885_contig_74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22 28 100.0 32 ............................ CTCTTCATCCACGATTGACGCAGCGATACGCC 82 28 100.0 32 ............................ ATCGTGCCGGATAGCAGCCGTTCGCCTAGGAC 142 28 100.0 32 ............................ ATAGAAGGAGCCAAGCAATGAACGACCGCGAA 202 28 100.0 32 ............................ TGTCCGCGAGCCGCGCCCAGTCCGAAGTGTTC 262 28 100.0 32 ............................ AAGGGAGGCGCGCGTGGCTGACTTCGTGCTGC 322 28 100.0 32 ............................ TCCCGAGGAAACGCCATGCACACCCTCAACCT 382 28 100.0 32 ............................ TTGCCGGTGGCCGTTTCGACGATGTGGAAGAA 442 28 100.0 32 ............................ ACCGGCGCCGACTGGCCTTCGATCCAGATAAC 502 28 100.0 32 ............................ TTCCAGGGCCTTCAGGTCCGGGTAGTCCTTGG 562 28 100.0 32 ............................ TCAATCGGCAGATCGCCAACATGCGGTCGAGC 622 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 682 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 742 28 100.0 32 ............................ TCGACATGGCGACGGCTCTTGAACGGTTCTAT 802 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 862 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGATGGGTTGACCACTACAGGG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10751-9763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTD01000074.1 Pseudomonas aeruginosa strain AZPAE14885 AZPAE14885_contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10750 28 92.9 32 C.A......................... TTACTGATTTCTGCGCTGTTGAACTGCTTCTG 10690 28 100.0 32 ............................ AGCGTGGCAGTGAAATCCCAGAGCGAGATACT 10630 28 100.0 32 ............................ GGTGCGCAGGTGCAGACCCCGCATTCGTTTCA 10570 28 100.0 32 ............................ TCCATCGACCCACTCGAACCAGCCCGAGATCG 10510 28 100.0 32 ............................ GGAAAACTCACCGGCCAGCGTGTTTTTCAGGT 10450 28 100.0 32 ............................ TGTCCGTGAACAGCGGGAAGCATTCAATCGTG 10390 28 100.0 32 ............................ AACGGTAGTAGCTGAACACGCTAGGCGAGGTT 10330 28 100.0 32 ............................ AGTCGAAGCTGCTGCGCAGCACCGCGGGGCGA 10270 28 100.0 32 ............................ ATGGGGCGCGCAGTGGTGGCTGAGGCTACCAA 10210 28 100.0 32 ............................ ATCCTCACCGGCGAATACAGCGTTGTTGACGA 10150 28 100.0 32 ............................ TGGGCGAGTGCCTCAGGGTCCAACATCGACGG 10090 28 100.0 32 ............................ TTCGGCAGGAGCGGCACGAGTTCGGGACACTG 10030 28 100.0 32 ............................ ACTGTGTCGCCGCAGCTTTACGCCCTGGCGTT 9970 28 100.0 32 ............................ AGAATGGTCCCGGTTTGCGTAGTCACGAACTC 9910 28 100.0 32 ............................ TGCTGGCGCTTCAATTGCTCTGCATAGGCGCA 9850 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 9790 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GATGGGTTGACC # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCGCCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCAAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGAGCCGGGGTATTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //