Array 1 1-557 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CTQG01000048.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V27 isolate V27, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
         1	    29	 100.0	    32	.............................	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT	
        62	    29	  82.8	    11	...................C.TC.GG...	AAGGCGAAATA                     	T [87] Deletion [102]
       103	    29	 100.0	    32	.............................	CCAGCTTACGCTATTTACGACGTTATTGAGCA	
       164	    29	  93.1	    32	.................A........T..	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT	
       225	    29	 100.0	    32	.............................	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT	
       286	    29	 100.0	    32	.............................	CGGAGGATGGAATATTTCCGAGGCTGGCGATT	
       347	    29	 100.0	    32	.............................	CAGGTTATGCGCAAAAATTAATTCATATTATA	
       408	    29	  96.6	    32	.................A...........	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA	
       469	    29	 100.0	    32	.............................	CGTTCATCGGCAGCGTCACGCAATATGAAGAT	
       530	    28	  82.8	     0	...............A.AA....-.G...	|                               	
==========	======	======	======	=============================	================================	==================
        10	    29	  95.5	    30	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   |
# Right flank :  GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG

# Questionable array : NO	 Score: 5.83
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [7-6] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.24,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//