Array 1 212558-213175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQC010000002.1 Anabaena cylindrica FACHB-318 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 212558 37 100.0 34 ..................................... AAGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAA 212629 37 100.0 34 ..................................... CGGGCAATGCAGGAGTGCAACCCGACCAAGACCG 212700 37 100.0 44 ..................................... AAGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTG 212781 37 100.0 36 ..................................... AAGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGA 212854 37 100.0 36 ..................................... ATCATTGATTTCATACACAACTCGCACAGCTATAAG 212927 37 100.0 33 ..................................... TTGATTTCGGTTATTGCGTTATCCCTCCTAAAA 212997 37 100.0 35 ..................................... CAACGACTAGGGCATGGAGTCTAGACCAGACGGTA 213069 37 100.0 33 ..................................... CTATTTCCTGAAACGATTTAGACAAGGATCTTT 213139 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 9 37 100.0 36 GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Left flank : GTGCTATTGTCACACTTGCTAGTAATTTGGAAATGAGTGTAGTGGCTGAAGGTGTAGAAACAGTAAACCAGTTGGTACAACTACAGTTATTAAAGTGTGACCAAGCCCAAGGATATTTGTTCTCCAAGCCCTTAAGTAGTGACAAAGTTAGCTTGTTATTGGCTGCAAAGATAGAATTTTAGAACACAAAATCTTGGCTTGTCCGCCATATTCAGTTTGGAATCAGAAAATTCTACGGAAACAACGAGCTAGCGTCAACCTATAGGTGTTTTCCCGTTAACCTCAATTTTTATGGCTGAATGCCTTATCCTCTATACATTTGAATGTAGTTGACACCTTCCAAGGGTTGACGCAAATTCTGAAAACCTTGCTATGACTAATTTCCAGAATTTATTCCCATTGTTCCTCTTGACAACCCAAGGTCTGAAAAGTTATCTTTGCCACAGATTAACGCAACTGAACCTTGAAAACCAAATACAGCAATACTTCTGTAACTAGCC # Right flank : CAACATGAAATTTCAAACTCTTTATCCTCTCTGCGTCTCTGCGTGATAGAAATCATCCCGCATTGATGCAACGCGCCCAAGCCCCGATTAAGTCTTGACTTGTTCCCTGTATACCCTGGGTGTAATACCCATGAGTTTACGAAATACATTTGTGAAGTGGCTTTGGCTTTGAAAGCCGACTTGGGTGCATATTTGCTCTATGGTTTTGTTAGTGCTACCCAGTAACTTTTTTGCGCGTTCAATTCGGCAATTCATAACATACTGATGTGGTGCAAAACCTGTTGATTGCTTAAATTGGCGCGAAAAGTAATACATACTCATTCCTACTGCTGTGGAAATATCGACCAAAGTCAAATCTTGGTCAAGGTTTTCATGAATGTAGGAAATTGCTTGCCTGAGTTTCCAGTGTGAAAGTCCTTTATGATGATGGTCGTCAAGGATTGTTCCACCTGTTACGCAATAGTGTTTGAGTAGGTGAATACACAGCGTGGTTGTTAGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 628-1538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQC010000034.1 Anabaena cylindrica FACHB-318 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 628 37 100.0 37 ..................................... AATTTTCTCTGGTAAAACAAACTTTTCTTTGATGCGA 702 37 100.0 35 ..................................... TTCGGCGGGCAATCTTAAAATACCCTGACCTGAAA 774 37 100.0 33 ..................................... GGCAGCACAATACTTATCACGGGCTAAATTCTG 844 37 100.0 35 ..................................... CTTTGGCTAATGCCTGCCAAGCTAATGGAAGTTAC 916 37 100.0 35 ..................................... CTATCTTCAGCGTATTGTAAAGCTTGCTTTAATTG 988 37 100.0 35 ..................................... TCTACACTGACCAATGTTGAAAGTATCAAGACAGG 1060 37 100.0 41 ..................................... AAATGACAACTATTATTCAATAACAACGATGCCAAAGTATG 1138 37 100.0 34 ..................................... AGCTATTGCACATTTACAAAAGCTCGGATATCAA 1209 37 100.0 39 ..................................... TCGAAATCCGGTGAGGATACCTTACTTTTAGCCCGTAAA 1285 37 100.0 33 ..................................... CGGATAATCCCTTACGGATGGATTCACAGATTT 1355 37 100.0 37 ..................................... TGAAACTCAGTTCGTGCCTCATCAAATTTAATCAAAT 1429 37 100.0 36 ..................................... TTGTGCTGTTCCTGCTGAGTAGCTGGAATAAGCAGC 1502 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 37 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Left flank : AGAAGATAAACGCCGTACTAAAATTCACAAAGTTCTCAAATCTTACGGACAGTGGATGCAGTATTCCGTTTTTGAATGTGACCTGACACCTACTCAGTATGCTAAACTGCGATCGCGTCTAGCCAAACTCATCAAACCAGACCAAGACAGCATCCGTTTTTATCACCTCTGTGCTTGCTGTCAAGGAAAAGTTGAGCGCATTGGCGGCGAAATGCCAATAGACACCACCGTATTTTTTGCTTAACTTGTGCGTCAACCTATAGGTGTTGGGCAAACACACTGAAATTTATCGTCCCAAACCCTTCCCACTCATGCTTTTGAACCCTCCAACACCACAATTGAGGTTGACGCAAACACCCCAAACCCTCACCATAAATACTTTTGCACCAATTTTCTCCAATTCACTCTTGACAACTCAGCTTCCGAAAAGCTACCTTAATCTGAGATTGACGAAACAGAACCTTGAAAACCAAATACAGCAAGCTTTCCACACCTGGGCG # Right flank : CATCAGATGCGGTAAACTTAATTGTCAGATTTTCAGCTTTATACCTTGCTCTCTTCGTTCTCTTTCACATTATCTTGTTTGTCATCATTACCATTGTCTTGCTGTTTCTTCTCTTGCACAACCTGAGTAGCATAAACTTCTACATCTCGCTGAATAATCTCTTCTACTTGATTGGCAAAGTTACTAAATGCTTTATCGTGGGTTTCATAATTCACATAAGGCCCAGTTAATTGAAAGAATTGCCAACCTTGTGTTTTCAAAGATTCGGCCGTGCGGCGATAGTGTCGCCAGCGTTCTCCATAGTGGAAAAATTCTTCAACAGCTGCGCTAATTGCTACAACTTGGCTAAGGGAAAAAGTAGCCCAAACAAAAATTTCCCGCACCTGAGAACTGTTAATATTGAGACTTACCAAAGCGGGTAGAGCTACACCACCAATAATTGTGACCAATCGTAATCTGTAATATCTATTCCGTGATTTACCTGCTTGTCTTTCCATCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 297287-297541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQC010000003.1 Anabaena cylindrica FACHB-318 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 297287 35 97.1 37 ....T.............................. CAATTATCCCCCAAGACCAATCCCCTGAAAGGGGAAG 297359 35 100.0 38 ................................... AGTTACACCAGTTGGATCTGGACTTGGTATTGGGACAT 297432 35 100.0 40 ................................... AGATGTGGTTGAAACTCAACCCGAAGTGGTTGAAAATCAG 297507 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 99.3 39 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : GATTATTTAAATTGGTCGCAATTTGAAAATGTTCGGCTCCAAAAATACTTTTCCAAAGTTCCAGGGATTCTAAAAAATATTTTTCGGCTTGTGAGTAATTCCCTTGTGAATAGTATAGTGCTGCTAGATTATTTAAAGATTGGGCAACATCAGGATGCTCTGAACCTAAGAGATTTTTTCTAATAGTTAAGGCTTGTAAATACAAGGGATTGGCTTCTAAATAACATCCTTGTATGCGATATAATTCTGCTAAGTTATTCAAGCTATCACAATATTCTGAATACTCTGTTAGCTGCTGGCTTTTCCCTAAGTTGACAGCTTGTTGGGCAATAATTATCGCTTGCTTTAAGTTTCCTTGTCCAGCAAGTTGCACAACCTGTAAGTTAAGTTGATTTAATTGTTTTAAGAGTTTTTTCATCTGCTAGTTCCAGATGTTTGTATATTTTTTAGGTTTGATTTTTCAATCAGTTATTTATTTTATCTAAAATCGTTCATCATCA # Right flank : CCCTACCCTTGTAGAAGCATTACTACGAGAGGGTTTGAAGGGGTCATTTTAGCGGGGGGTACATTTTACCTGTCAACAAGCACAAATTATTGACAATTGATGACTCATGCACCCTATTGAAACCCTTGTACAGTAAGCGATTAGCGGGGGTCAACGAAAGAATCAGTGTTTTGGCGATCGCTCTACCCCCGCTAAAAACTTACGTATGGAAAGTAAAACTAAGCACTTTTGCGTTTATTTTGAAACCTGATATTAAGTTTTCAAGGTTCTGTTGCTATTGAGCAGTAGTATAACAAACTACTTGAAGTTTTGAACCCTTAAACTATTAACTTTTCTATCATGCAGTAATCATGTAATCTGTGTACCAAATTTGATATTCTCCGCCTCCAGTCACATATTCTAGTAACGCCACCAGATGACTTGCTTCTAATTCCAAAGGGTCATTATCTCCTGGCGGTAGCCAGTCTAATTCAGGTACTTCGTTGGTAAAAACTGCGATA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 302792-301739 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQC010000003.1 Anabaena cylindrica FACHB-318 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 302791 35 97.1 36 .............................C..... AAAAAAAAGCCGCATTTAATTTGGCAAATTCCAATG 302720 35 97.1 39 .............................C..... CGGGCTTGTTACCTTAGAGATACATTAAAATTAAATCCA 302646 35 97.1 36 .............................C..... TTTTGGTTTACGTTCCTATTGATAACCAGTTTGAAG 302575 35 97.1 35 .............................C..... CTGAAGAGATTGAAAGACTCAAACGCCAGGCCGAA 302505 35 97.1 39 .............................C..... CGTTTTGTTGCTCGCATTATCGTTTCTTGCATTTTATTG 302431 35 97.1 40 .............................C..... TTACAAACTTTTTCTATCCACCAGTTCCGTTTTTTATTAG 302356 35 100.0 39 ................................... CTAGTTGGTCCGCTTTCAAGCCCAACAAATTATGATAGT 302282 35 100.0 38 ................................... ATAATAATTTTCTTTATATATTTCCTTGTCTTTTATTT 302209 35 100.0 35 ................................... AGAAATTTCTATCGGAGGTGTAGGCGCACAATAAA 302139 35 100.0 34 ................................... TGGTGGAACAAGTTTTGTCGGAATCGGTGAAAAC 302070 35 100.0 39 ................................... ACTCTCCGCTTTGCTTGTTGTTGCCATTAAGGCACAAGA 301996 35 100.0 39 ................................... TATATCTAGAATTCCAGGAATAAATTTTCTAGGAAGCGT 301922 35 100.0 40 ................................... ACATATAATCGATGCAGAAATTCAAGCTTTTCTTAGCAGT 301847 35 100.0 39 ................................... CTTTTTAATAAGTTAGACCCAAACACACAATTTCTGATA 301773 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 15 35 98.8 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : AATCTGTAATTTTATTTTCTACTTCTCGGTTAATTAATTGACTGGCTAATTTTTTCGCATCATCTAAATTTTTACCTATAGCAAAGGCTAAAAACCCACCCAAAAATGCAAATACTACTAAGGTAAATTGCATTGCAGCAACAAATCTGTTAAAGCTTTCACCTAGTTGACCATTGGTAGCCTTGAGAAATTCTAACTGGCTTTTGAGTAGTTCAATATCATTGATATTTTTTGCCGGATTTACCACTGGTGAAGGTGTGGTTGTAGGTGTTGGAGTTTGGGCAATAACTAAATCCCAAAGGTGGGATAAATCAATTGTAGGTAGCCAATCCATAGGTATTTTGTTGATGGCGATTACTTCTCTATTTAATCATGTGCGATCGCCTGCATTATTTTATTCCAACTTTAACTTAAGCGATCGCAACTTCCCTTAAGTTTCAATAGTGGTTTTACTGTGCGATCGCATTACATCACCGCTACTAAATCCCGCTATTGATTAT # Right flank : CCTACCTGTTCAGAAGCCTTGCCACGATTGAGTTTGAGATAGGTCAATCTGAGGGGGTCATTTTTTCAGCCCAATAATTGATAAACTCTGTCAATAAACCACTTTCTAATGAGCCTCAAACGCTTACTCAGCAAGCTATCTGAGGGGGTCAACGAAAGAATCAGGGTTTCAGCCGTTGCCTGACCCCCTCAGATGCTTATCATTCAACAAAAAACTATAAGTTTGCCAAATGAATCAGAGTAAATGGAAATACTTAATCTAAGTATTATTAACTTTTCATGGTTCAAAAACTCTGATGATCAGTGTATAGAAACCTACTAAAAAAGTCAAGGTGAAGCATAAAGTATAAAATTACGCTCCCTTCCTTCCCCTTTTAAGCCTACTGTGTACACACAAGCCCACGAGATGTTCCCTACGGTTAGGCTTATACCATTTCACTAAAATTCTGATACAGATCCAAATCCAGAAACCTTTGCAAAATATAGGTTTCTTAATTTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 739-417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQC010000065.1 Anabaena cylindrica FACHB-318 contig65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 738 38 97.4 34 A..................................... CTGATGAAGAAAAAGTTAGTATCTTTATCCATCG 666 38 100.0 32 ...................................... GAAGCGGTGGGGCGATCGCATCCAAAATTTAA 596 38 100.0 33 ...................................... TTTGAATATTCAGAACTTTATATTGTGCGCGAT 525 38 100.0 35 ...................................... ATTAACAGCTTCTACCAAATCAGCTTGCTCCGTCA 452 36 78.9 0 G.................G.....AC-.T...-....A | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 95.3 34 CGTTGCAACCCTCCTTCCAGTAATGGGAGGGTTGAAAG # Left flank : GCAAAAGAATTAGCCCTCTATGCTTATAGTCTCCGCCTAGCTAGGCGAAGTTGACAAACATCTGAACCTTGAAAATATAATATGTAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTCTGAATTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTGCCAATAGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACCCAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTGATTTGACGCACCAAAGAGAGGTCAAAATTCCGATCTAGGTTCGCGCACATCCTGAAAACCTTATCCTACAAGGAATTTATGAGTAAATTTCTTTTGTAGACAATTCAAAAATTACATCCTGGGAGGCTATTTGATGAGGTTCGCGCAAATCTGCTTCAAAAACCTTGCTAGACAAGCGTTTCATAGAGTGGC # Right flank : ACAAATTGGATATGAAACTGCCTTACGTTGTCTGATGGTGTAATTAATTTCCAAGAAGTAGAGGGTTGAAAGCAAATCCCGTCATCGGCTTGTAACTAAAGTTATTCAGGATAAGCTACTCATAGAAGTGATTAAAAGAGCTTTTTGAATGCAAACGCTTATAATAGGGGCTAAATATATAGAGAAACTCCATATATAAATTGTTGCTTTTCCGAAAAATGACAATAATTTGTCACAAATATATATGGAAGCGAGTTACTAAGTTGGATGACAATAATTTGTCACAACGACATCAATTTGTCACCGACGACAAATAAGAGACCATTTATAAAGTAAATCTTTAGACGACTAGACGACGTAGCATAATACGAGTCATAACGGCATATATGGCAGCCTCACTCATTTCTGGGAGACGCT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGCAACCCTCCTTCCAGTAATGGGAGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.20,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 109581-110847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQC010000007.1 Anabaena cylindrica FACHB-318 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 109581 37 100.0 34 ..................................... GCTCTTACTGATGCCACATCAATCGCTGTAGATG 109652 37 100.0 34 ..................................... TGATGTCTAACCCCAGCAATCTAATCGCTGGCGG 109723 37 100.0 36 ..................................... GAATCTTCACCCACCCCCCCCCATCCCGCAAAAAAC 109796 37 100.0 40 ..................................... TGTTTACTTAGCAAAGAATAGCTTAAATACTTTTGCTATG 109873 37 100.0 34 ..................................... AAGAGAAGAGGCAAAGTGAGCCACCCCCCTAGCA 109944 37 100.0 36 ..................................... ACCCTCAGCCTCTCTATCACGCAATCCAAAGCTAAA 110017 37 100.0 34 ..................................... TGACTGTATTAGACGATTTGCTGATAATGTGTGT 110088 37 100.0 33 ..................................... CAGACTCATTGATTACAGGTGATCGCTTCTTGT 110158 37 62.2 105 ................CG..G.G.GCAACT..CTCC. AGACCTAACCCCCAACCCCTTCCCTACAAGGGAAGGGGAGTAATAATTAAAGCCTCTCTCCTTGCAGGGGAGAGGTTTGGAGAGGGGTTTTAAGAATAAGTCGCA 110300 37 81.1 44 CA.CGCGT............................. TCGCTTATACAACAAAGGGATCTTCTTCAATGTGTGGAACGAAG 110381 37 100.0 34 ..................................... TCGCTTATACTGCGTGGGGAAAAACAAGAAAAGG 110452 37 100.0 36 ..................................... AGGAAACAGCATCAAAAATAAATAATCTAGCCTCAA 110525 37 97.3 31 ..........................T.......... TGAGCTTTTTTATCAAGCTATCTTCACTCAT 110593 37 100.0 34 ..................................... TCGCAGGGCAACCCTCAACAACGGAACCATATCG 110664 37 100.0 36 ..................................... AAGTACAGATTCAAGTTGCATCAGCAGTAGCTGCAA 110737 37 100.0 37 ..................................... GCTAAAATGCTAAAAAAACAGCAATAACGATTGATAG 110811 37 94.6 0 ...................................CA | ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 17 37 96.2 40 GTTTTAACTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : TTGAAAGCACTACAGGATTTACCTTGCAATTTGCCACCGATTTTAGTTATTGACCAACAACTAAGTCGCTCTCAAGTTACTTCTCGCAGTAAACTGACTCATGCCAAAAAGCAGGAATCTGAATCTATCGCGGGTGTGGCAAAAGCGATCGCTACCCAAATTGTCCCACGTTCCATCTCAATGGAAGACTTATTAACTCAAATTCATCAAACTTTGACTCTCAATGAACGCTAAGGAGTGGCGAGGATTAGCGTCAATCTATAGGTGTTTTTTTCACAGTACCAAATTTTACGGCTAAAATGCTTATACTGTCATGGCTTGAGTCAGTTTAGCTTCAGTATGAGGTTGACGCGATCGCCTGAACCTTTGCTAGAGTATCTTTTTCGGTATTTTTTAAGATGCTACTCTTGACAACCCAATGGCTGAAAAGCTACCTTAGTTTCAGATTGACGCAACCGCACCTTGAAAACTAAATACAGTAAGCCTTCTAGACTCAGGCA # Right flank : AAACTCTTAAAACAACCTGCACCTAAAGCCGCTTTACGTAGGGTTTCAAAAAACAAACCCTGGCTAATTATCTATTTAAAAATAGACGGTAGAATGCTAGGAGCCAACCATAAACCGTAACCAATAAATGCAAATATAACTGTAATGACAGCAGTGACGACATAGCTGAGGCAAATTAGTAAACCATCAGATTCAATTGTGGCGATCGCTAATAATAAAATACCAACAGTAGGTATCGGGTTAGTTAAGGGAATTGGTGAGATAAGTAATATTGTCAACCAAGATATACAAAACCCGTTGATACGCCAAATTAATGGGTTATGAGCTATTTTGCTTAACCGGGGACGGGCGATTTTCTCTACAACCTTGGTGACACGCCGCAGATTTTGGAGGAGAAACTGGGCAAAAGGACGGGGGAATTTATAATGAGCGATTTTTTTAGGTAGCCAAGGCGATCGCCTACCCAAAAGCATCTGTACCGATAATATCAGACAGGCAGC # Questionable array : NO Score: 8.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 25613-27830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQC010000009.1 Anabaena cylindrica FACHB-318 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 25613 37 100.0 34 ..................................... TCCATGAACCTCTCCCCGCTGACCCGCGCGTCCC 25684 37 100.0 42 ..................................... AAAAAGCATCTAAAAGGCTGAAGGATTTACCAGAAGAGGCGA 25763 37 100.0 48 ..................................... CCACTCTCGTGCTGCATCGGAGCGGAAGCACAGGCCCGTGGGAGCTCG 25848 37 100.0 47 ..................................... GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG 25932 37 100.0 43 ..................................... CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG 26012 37 100.0 44 ..................................... TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA 26093 37 100.0 41 ..................................... TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG 26171 37 100.0 46 ..................................... TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA 26254 37 100.0 39 ..................................... CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG 26330 37 100.0 36 ..................................... GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA 26403 37 100.0 44 ..................................... GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT 26484 37 100.0 45 ..................................... GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA 26566 37 100.0 44 ..................................... GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA 26647 37 100.0 37 ..................................... TATCAAACTTATATAAACACAGCAAAGCTATCCTATG 26721 37 100.0 45 ..................................... GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG 26803 37 100.0 42 ..................................... GTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGC 26882 37 100.0 47 ..................................... CTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTG 26966 37 100.0 41 ..................................... TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG 27044 37 100.0 35 ..................................... GTTTGTATGGACGGCCATACAGATCGCCGATGGAA 27116 37 100.0 35 ..................................... TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG 27188 37 100.0 40 ..................................... ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA 27265 37 100.0 33 ..................................... TGTCCCTATCCAAAATACTCCTTTTTTATAAGG 27335 37 100.0 37 ..................................... CGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTT 27409 37 100.0 42 ..................................... CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT 27488 37 100.0 39 ..................................... TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA 27564 37 100.0 39 ..................................... ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA 27640 37 100.0 43 ..................................... ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA 27720 37 100.0 37 ..................................... CGTTCTTTTAAATGACGCAGAGTATTATCTACAATTA 27794 37 91.9 0 .................................GTG. | ========== ====== ====== ====== ===================================== ================================================ ================== 29 37 99.7 41 GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Left flank : TAGAGGAGTCTGTTTTGAATTATCAGTTAGAGAAGCGTTGGCTACCCATACTGAAATTAAGTGAGGACAGTCTCAGGGTTTATCCTCTTGATGCTACAGCCAAGCAGCAAACAAGGGTCTATGGTGGTGAGCCTCCTTATGAACCACCAGATTATTTAATTTTGTAACGTCTATACTCTGGTGAAAATGATGTTTTTAAAGGCTGAAACGCAAATTTTTACTAGGGCTTGGCAGTTTGTAACGGATTGTAAATGTCACTGCTAATTCGTCGCAGGGAGATATGACAAGCTAGGAAGAATAAATATGTGTAAATAAAAGTAAAGTTAGTAATTTAACCTTGACTACTGGAGTTTATTCGGTTAAATTGTCTATAAAGCTGAATTTTGGTAAAAAAGCTTTTGATTTATCACTACTGAGTGTATAAACTACAATAGCTTTTGCGTACCTCGGCGCAACTGAACCTTGAAATCTAAATATAGTAATAGTTTCCAAAGGGTAGG # Right flank : CGACTCTAGGCATAGCCAAGTCAGTAGGCAAGCCAAGCTTACTTACCCACAAGGGGGCGGAAATTAAAAGATATAGCTGTTACCAGTAGTGTTAGAACATCAATAGATGATACAACCTAGACACAACAAGACTTTTCACCCAGTACCCAGTCCCCAATCCCCAATCCCCAGCTATATGATTGAGCGATCGCCAGAATTTGGATAAAATAATTGACGGGACTATAATTTTGGGCGTTGCATAAATGCGGGATGAATTGAGACTTTTTTGTAAAGCAGAATATTGATTCTACCCTGCGGGAACGCCTTGCGGCGAATGCGTCTTTGCGCCTTTGCAGACATACTTTAAGGAAATCTCCCCGCTAAATTCCACTGCGGGAACGCCTTGCGGCGAATGCGTCTTTGCGCCTACCGCAAGCGGAACGCCTGGCGGCGAATGCGTGAGACAAAAATCATCCCACTAATCAGCAACGCCTAATTTTGAATTACCCAAAGAGTGGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 102327-101418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQC010000017.1 Anabaena cylindrica FACHB-318 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================================================================================================================================== ================== 102326 35 100.0 41 ................................... TATATATCATACCAGCCCAACCAGTTGGAATTGCTCCAGCA 102250 35 100.0 39 ................................... TTGAAGCAGTTGCAGCCTTTTTGCGAGCTTCTTCTACTT 102176 35 100.0 41 ................................... AGTATGCTGACCAGCGCTCCACGCTTGGTCGATTTCATCTT 102100 35 100.0 40 ................................... GATCGAGTCAGATCTACCCAGCGGGCGCTGAGCGCTTTCA 102025 35 100.0 39 ................................... CCTAACTGTTCGGTTGCTTTTGTGGCAACCTAAAAAATT 101951 35 100.0 40 ................................... ATAAAAGACATATTATGCCTTGTTTGCCCTATCATAGACA 101876 35 100.0 42 ................................... AAATATATTGAGCAACCTACGTTGCATACAATATAATCCAGA 101799 35 100.0 168 ................................... TTTATAAAACCGCCTCTACCTTGAGCAACATCTTGTTGGCGTTGTATAAATGCGGGATGAATTGAGACTTTTATACAAAGCAGAATATTGATTCTTTGCGCCTACTCTTCGAGTTCCGCTTGCAGTATGCGTGATACAAAAATCATCCCACTAATCAGCAACGCCCTT 101596 35 91.4 38 ........A...........TG............. TTCCATTCCAAACCTTCTGTGCCACACATAGAAAAAAT 101523 35 85.7 38 .......G...........CTG........A.... ACTAAAGGATGCTCAACCACCAAGCCTTGAAAATTAAG 101450 33 91.4 0 ..........A...-...............-.... | ========== ====== ====== ====== =================================== ======================================================================================================================================================================== ================== 11 35 97.1 53 GTTTTTAATCTCTTACCCCTCACGGGGATGGAAAC # Left flank : AACTACGAAATTTTCTAGAGGTTTTGACCCGGTAAGTAGAAATATGCGGCAGTTTTAACAAAAGCTTTGCCTTTTGGAGTTTGCTATGGTACTGTTTTTACAAACATCTGCACCTTGAAAATTAAATAAGTACATATAGCGTTTCTCGTTTGTCTGCAATACGTTTTGACTTCTATCCTACAAGGAGACAGGCTTTAAGGCTTACTCTGGAGGTTAAGTCTGTATTAGACTCAACTGCAAACCGCTATATTCTTAACTTGTAATCGAATGGTTAGTTTCGTCAAGTTATTTTATTAAGAAATGTAACCTGAGGGGGTCGCCTAAAGCCTGAAAAGCTTATTATCTCGTTGACCCCCTCAGATAGCTTACCCTATAAGGGTTTGAGTCACCTTGATGATGTAGTTATTGTCAATAAGCGATCTCTATTGACAGGTAAAATATACCCCCCTCAGTTTTACAGTTCTGTAAGTCTTATTTGGTAAGCTTTCTGTAAGTGTAGG # Right flank : AGAAAGACGATCGCCTAAACTATCCAAATATGTAGAGAGACACAAATATTTGTAGGATAGGTAGAGCGATCGCCTTTTAACTAAAGCCTATGCAGATATCATCTTCCGGCTATATCCTAGCGTTGGACTTGGGAACAACTGGAAACCGGGCATTTATCTTTAACAATGCAGGTAAAATAGTTGCTCAAGCATATAAGGAACTAACACAACATTACCCCCAACCAGGATGGTTAGAGCATGACGCGGAAGAAATCTGGCAAGATACCTGCTGGGTGATGAAGACAGCCATCGTCAATGCACAAATATCTCCTAGTGAAATTGCGGCTATAGGTTTGACTGTACAACGGGAAACTTGCCTACTCTGGGACAAAACCACGGGGAGACCATTACATAAAGCCATTGTTTGGCAAGACCGCCGCACGGCTCCCCTGTGTCATCAGTTACAGGAAAAAGGCTATGCTCAGGAAATTTACAGTCGTACTGGTTTAGTAGTTGACGCT # Questionable array : NO Score: 4.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAATCTCTTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 114327-113560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQC010000018.1 Anabaena cylindrica FACHB-318 contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 114326 36 100.0 33 .................................... TTGTCATCTAGAAATGCAGCTTTGTATGCAAGA 114257 36 100.0 45 .................................... TTATATTGGTAGAGGCTTTTTTAGCTTCGTTTATATCAATGTGCA 114176 36 100.0 37 .................................... GCAGGTATTGCTGCTTGCACAACGCTTGCAGTAGTTA 114103 36 100.0 37 .................................... GTTTTTAATCTCCGAAGGACTAATGCTTGGAGCAGGA 114030 36 100.0 39 .................................... CGTTCCATCTGCTGTTCGTGCAAAAAGCGATGGTCGCTT 113955 36 100.0 35 .................................... TCGACGTCCTATTTTCGAGATTCCTCGATAATCAT 113884 36 100.0 32 .................................... AACAGTCACAAATCCTAGAGTGGCTAAGGGAG 113816 36 100.0 37 .................................... ATCTTGTAATTTCAGGATATAATGCAAAGATGATTGA 113743 36 100.0 36 .................................... ATCCGACATCGCTATAGAAATTGTTTCCAGTCTCTC 113671 36 100.0 40 .................................... CCGATAGCGAATGCCGTTTATCTCCAGGCAAAAGATAAAG 113595 36 86.1 0 ....T.....G.C.................AT.... | ========== ====== ====== ====== ==================================== ============================================= ================== 11 36 98.7 37 CTTTCCGATCACATCACCCCGAAAGGGGATGGAAAC # Left flank : AAGACAGGCTTTAGTTGATTGGGCGCAGAAAAAAGGAGTGCAAGGAGTTAATGACTATCGAAAGCAAAAAAATGTTGTGAGTATTGATGGTTTACCGACTCCACTCAGCAAATTATTTTAAATGGGTTTTAGTGGGGGATTGGTAATTGGTAATCGTAAAAAGCAGTTACCTTTTACCAACCATCTTGTAGCCAGACTTGATATTCATTGAAATGGGCGTGCAATTGCTCAAAATCCACTGTTTTTGTAACGATTATGTAACAAATTTGACAAAAATGACTAATAAATTTTATTTTAAACACTAGCGTATGTCGTTCATCGACACCACTCGCCCGAACCTTGAAAACCTCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGTAAGGATTTCCGGCTGCAAAATTCCCCACTTCTGAAATTTATTTGATTAAATAAAAAAGTGGTGTCGAATTTGGGGTCTGAAACCCTCTCTATACAAGCGTTGTAGAAGTGAACT # Right flank : TAGCGATCGCACTTTGCGATCGCATTGTTAAATACGGCGGAAATATTATTTACCTATCAATTAGCCTGAGAAAATATCAGCAAAGATGTAATTGCTTTTGCTACAAAGATGATATTTGTCATAAATAAGTAATTGCCGAAAACAGAAAGCATTTACAACAAATGAGAAAGCAATATCTCTAATTGCTTGCGGAAAACACTGAAATGAATACGCGATCTACTGAAATGAGAAAGCATTTACAGCAAATGAATAAGCAATATGTCTAATTGCTTGCGGAAAACACTGAAATGAGAAAGCATTTAAGGCAAATGAGTAAGCATTTAAGCATTTTGCTTTCTCAAACAGGCAAATTATATAGCTGTTGACGGTTGACAGTTGACAGTTGACGGTGAGGCAGTCGCAGTTAGTTAGTAGGTTGGGTGGAACGAAGTGTAACCCAACAAATAATATTGATAAATTAGCAGATTAAACTACAAAAATACCTCAATTTAATAAATCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGATCACATCACCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 121562-121315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQC010000018.1 Anabaena cylindrica FACHB-318 contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 121561 32 100.0 41 ................................ TTTAAGTGGTGGCAGCGCTGCTAGGATTCCTAATAGGTTTC 121488 32 100.0 39 ................................ AATAACTGGATAGCACTAGCAGAAGGGCTAGAAGGTTTC 121417 32 100.0 39 ................................ GTATATCAAGCGGGTACAGGTAACTCAGGAAAAAGTTTC 121346 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================= ================== 4 32 100.0 40 AATCCCTGATAGGGATTTTAGAGGGTTTTAAC # Left flank : TGTTCAGGGTGAAATATCAACAGAATCCCAATCCAGGTAGAACTCAGCACTAAACCAGCACTAATGAGTAAAATTGCGATCGCAATTATTGAGGATGGTTTATAGGATTTTGATGGAGAAATCGCTTTCTGTATCTGGGTTTGATTAATTTTTCCCTCACCTTCTTTTGGCAAATCGGTATTACCTACCTGTTGTTGCTGGATTTGAGGTTTCTTCCCTTCCAAATCAGAGCCGTTTTGCTTAGAAGATTTTGGCGTTAGCTTGCGCGAGCGATTTGCCATGTTATTTCTCTGTTAATTTAAGGTATTAATTTGTGTTTGTTTTTTCTTTTATACTCGCGCTTTGATTAGTTGCCTAGAAGTAGGTGGTTTAATTTTCTACACAAAAAGGATGAGTAGATATTTTGGGCGATCGCCTTTAGGTATTGCTTTGCCTAGCACGTTGGGTTTTCCGCAAAATTAGGGTTGTAGTTTAGAGTACTTACGCACCAGAGTCGTTTT # Right flank : CGCTCGGCTCTCAAAGCCTTGCTGTATTTGGTTTTCAAGGTTCAGTTGCGTGAATTATGGAGCAAAGATAACTTTTCAGACATGGGATTGTCAAGAGGCGCATGGCAAAAATTAACTCAAAAGCTGTTACAGCAAAGGTTAGAGGTAATTGCGTCAACCACAGTTTTAATGTTATGGGCTGTAACCTAATCAGGGTAAGGCATAGAGGCAAGAAACTGAATCTGTGCCGAAAAACATCTATGGGTTGACCGGAAGAGGCAGGGCGAGGCTTGTACAAGCTTCCGTCACGGATTTCCCCCTTGCTCCCTGCCCCCTGCCCCTTTTCCTCTTGCTGACGCAATATTTTAAAAACTAAAGGTGGTACGGATAGCACCGATGAAAATATCATTGTTGCTGGAAATATGACCAGGGTCAGTGACGAGAAAAAAGCCAGGAGTGATGGCGATATTATCATTGACTAAATAGCGGTAAAAAACTTCGTAGTGAGTGGAATTGCCAGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTGATAGGGATTTTAGAGGGTTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //