Array 1 297334-296886 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHM01000003.1 Pectobacterium betavasculorum strain NCPPB 2795 ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 297333 28 100.0 32 ............................ TCTATATGGTCGGTCGCTAGAAAGGGCTTTTT 297273 28 100.0 32 ............................ GGTAACCACATTTTAGTTCTAACGCAAATATT 297213 28 100.0 32 ............................ CGGCGGCGGATTATTACAAACTACACGCTATT 297153 28 100.0 32 ............................ TTCTTCGGGGAACTTCTTCTCAAGCGTTAATT 297093 28 100.0 32 ............................ TTAGTGCCGCCGCGAGTGCGCCCATACTTCTC 297033 28 100.0 32 ............................ ATGCGATCCGCGCCAGCGACACCTGCGCCTTT 296973 28 100.0 32 ............................ AACAAACCGATTAGTGGAGTGATTGCGAAAAT 296913 28 75.0 0 ...........TGC.........G.TTC | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CCCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAGAAACGAATGCCAATTGGGTTTGACTGGACGCAACATGATGGTATCCCCCTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAATCCATATCACGCGGTAAGCGAATAGCACGGTTATTACCGTTTTTAAATACCGAAACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCCAGCCGCTAGCCTGACTAAAACATAGGCTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCAGCATATGTATGCACTTAACATAGGTCTACCGATAATAGATAAAATCGTTGCCACAGGATTGGCACCCTTTTTCCATGAACACTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTACGATAAAAAGGGTTTTTCGGAGAAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAACG # Right flank : TATCGGAATGCGTCGCTGGCGCGACGCATTCTTGAGGGCTATTCCCCATTCAGCGTAACAATCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATACCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTAATGGGAATTGTCAGGCTGTTTCCTAGCAGGCTGCCTTTCAGGTGGGCGGGCATGTCGTCACTGCCTTCATAAGTATGGCGGTAGTACGGTTCATCTTCAGGTACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGCCCGACTTTTATCTGGCGCAGTGCAACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGAAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGACTTCACGTGCCAGAATAGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 307425-308832 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHM01000003.1 Pectobacterium betavasculorum strain NCPPB 2795 ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 307425 28 100.0 32 ............................ TGTGCGGCAGTGAACAACATTACGAATCCAAT 307485 28 100.0 32 ............................ TGAAGCGAATATTAGAAAGCCGAAGCGTAAAA 307545 28 100.0 32 ............................ ATTGCCAGAAAGAAGCCGTTAGGAGACATGAT 307605 28 100.0 32 ............................ GTAAACGAATTGTCCGAATTCTTCAGCAATAT 307665 28 100.0 32 ............................ AATAAGCGGTGAAAAGCGCGGTTATCACACCG 307725 28 100.0 32 ............................ TCCCCGATGTGTTTTGCAAAATGCTTTCCATT 307785 28 100.0 32 ............................ TTCTGACTCGCCCGGGTCGTTCAATGATTCAT 307845 28 100.0 32 ............................ TGGTAACGACGGCACATAAAAAGTGTTGACCT 307905 28 100.0 32 ............................ TTATTCAGTGACGCGGAATCTTTTACATATCA 307965 28 100.0 32 ............................ ACTTCAATAACGCCAGCGCGTAGATCATAAGC 308025 28 100.0 32 ............................ AACCTGGAAGTAGGTATGACGGTGAGTTTAAA 308085 28 100.0 32 ............................ GTATTAAGGCAAGCGAAAATAAGGATCGCAAA 308145 28 100.0 32 ............................ ACAAGCACAAAACAGCAACAGAGTAAATATTT 308205 28 100.0 32 ............................ TGAGATTGATAGAATCGAAAAATCTAGATTAG 308265 28 100.0 32 ............................ CCGATTCCGCTATGTCTTTATCCGCTGTTTAT 308325 28 100.0 32 ............................ GTTGAAGCCGACGAGTTTGAAAAGAAGGATGA 308385 28 100.0 32 ............................ CGGTGGCGATACTGGCAATCAGGTAGACATGG 308445 28 100.0 32 ............................ TAGCCCCAAGCTAATGGGGCACGTGGTGGAAT 308505 28 100.0 32 ............................ ATGACTCATACATTTCTTTCTGTTGTTTTGAG 308565 28 100.0 32 ............................ TTTAAATACCCCATCATTAAAATAACCAGTAC 308625 28 100.0 32 ............................ AGACGAGCTGACGTTTGTGTATGCCGCTACGG 308685 28 100.0 32 ............................ GTGTCAAATCTGGCTCACGAAAAATACGCAAC 308745 28 100.0 32 ............................ TTCTGCGGCGTGATGTTTGATAAATAATTCAG 308805 28 78.6 0 A..........T.........C..TTC. | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAGTCCGAAGGCCTAAAGGCGTTATCCATAATGTATTTTCTGCCGTAATAGATAGTAGCCATGACGCCAGCTTAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAACTTTCAGAAAACTGATGAAAATCAGACTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATATTACCCAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGATTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATTGGGCTACA # Right flank : ACGGTACTCAGCGCTGCTGTCTGGTTATTATCGAGGCTGCACTGCGCCATCGCTCAATGCCTGTAGCTCTTAAATAACGTATTGTTGATGCCCTATTTTCGTAATGTTTTCAAGTAATGGGTTTCTTTTGGTGGGAATGGAAAATTGCAGATTGAATGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAGGGAATGAGTGGCTATGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAGGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 317444-316816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHM01000003.1 Pectobacterium betavasculorum strain NCPPB 2795 ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 317443 28 100.0 32 ............................ TTCAGCGCTTAAGGTGAGATGGATCAGATCGC 317383 28 100.0 32 ............................ CCGTTGAAGCCGGACAGGCGCACTCTCACGCC 317323 28 100.0 32 ............................ ATCATGACGGCTTCGAAGGGTTAAAAACACAC 317263 28 100.0 32 ............................ AATCTCAATAAGACCGCTGGCCCAGCACCATG 317203 28 100.0 32 ............................ AGAATTACGCAGTGGCGCATCAGGTCGTACTG 317143 28 100.0 32 ............................ AGAAACAAAGGGGAAAGGTAGATGAGTCCAGA 317083 28 100.0 32 ............................ TTAAAGTGGTGACCGGTAATCCGGGCAAACGA 317023 28 100.0 32 ............................ GCAAATGACACCGTAACGGAACAAATCGGACT 316963 28 100.0 32 ............................ CTTTTTCATCGCGAACGCGTTTGCACAAACTT 316903 28 100.0 32 ............................ TCACAATTTATCGTTCTGAACACGCATCAGAT 316843 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGATACTTTCTCCGACACCTGGTGAACTGTATGTTTCCATGCTGGTCGGCGTAGCGATGACCACTATCGGCGTCGTGAAGTATCGGCACGCTCAGCACAACCCGATAGATCCCCACTCAACGCAGACCAAAACAGTTGCCACAAAAACGATCTCCACAAAAACAATCACCGCATTCGTGCTGATCGCGCTTTACCTGGCACTTCCACTGTACCTCTATCTACGCGAACCTCTACCCTACTGCGCCTTTAGCCCCAGCGGACAGCAGTTAAGTATCTGTCTGGGAGACAATGACGAGCGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTATCCAAGACCCTTTTTTAACGGCTGGTCGTAACTTACTGATTTTTATCCCTCAGCAGCCGCAATGATAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCTCTTTAATAATCTGGTTATTAGCATAAAATTCTTACG # Right flank : ACAAAACGTTTCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACATGGTTTTGGGAACGCGATGTACAATATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACCAACGGCCGCCTGACTAATCAGGAATTGAGCGAACTGGTCGGGCTTTCCGCCTCGCAGTGCTCACGCCGACGCATCGCGCTGGAACAGGCACAGCTCATTCTTGGCTACCATGCCCGCCTGTCGCCGAATGCCGTTGGATTGGAATGTCTGGGCTTAATTGAAGTGCGGTTAATCAACCACACCAGCGAATATGTTGAACGCTTTCACCAAATGCTGGGGGAAGTGGATGCGATTATTGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCCGGACTCAGCACGCTGATTAGTCAAATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //