Array 1 63386-64882 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAIZ01000016.1 Prevotella shahii DSM 15611 = JCM 12083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 63386 37 100.0 36 ..................................... GAAACAAGTTCTGCTTTTGATGAAAAGAAAAGAGCA 63459 37 100.0 34 ..................................... CAATAGTAGCTATGCCAACACAAAGTGTAGGAAA 63530 37 100.0 36 ..................................... TTCTCTTGTTGTAAATTCTCGTTACAAACAGAATTT 63603 37 100.0 38 ..................................... TTCTTGATGAGTTGTTCAATTACTTGTTTCTTTTCCAT 63678 37 100.0 38 ..................................... GTAGGACTGAATACGCATGTTACAATACTTGTGCCTGA 63753 37 100.0 37 ..................................... AAACGATAGTGTGTAACTATTTGCAGAGCCAAAGGCT 63827 37 100.0 34 ..................................... TAATAATAGCATCGTAATAAGTGCTATTATGAGC 63898 37 100.0 35 ..................................... GAGATTTGTGGAGTCCAGTAGGTTTTCAACTGCAT 63970 37 100.0 40 ..................................... ATTTTTTAATTTCAGCAATGATGCTCTTTTTGTCGTCACC 64047 37 100.0 35 ..................................... AAGGTGTCAACCTACCTTTTGCGATACCGTTTAAT 64119 37 100.0 35 ..................................... CATGTTTAAAAGTATGTAAAATCTCTTTTTTGTAG 64191 37 100.0 36 ..................................... TATCAAATCCAAATCTTACACTGGTGTTGGTATCGA 64264 37 100.0 37 ..................................... AGGACAAGCCAGCAACCCAACCCTCCGCAAGCCTTAC 64338 37 100.0 35 ..................................... TCAAGTAAGATTGTCTCTATCTTTGATACAATTTC 64410 37 100.0 37 ..................................... AAATAAAAACTATATTTCTCTCACCTTCAGCAAAGCT 64484 37 100.0 36 ..................................... GACCAAGGATTGTGATATTCCTGACCACTTGCAACA 64557 37 100.0 36 ..................................... TATCAGCAGCTTCATCATCAAGATAACTACGAACTT 64630 37 100.0 34 ..................................... ACGGATGGGTGCTGCAATACTATGCAGGTAAAAA 64701 37 100.0 37 ..................................... ATAAGAAATCCAGTGTCGATCTGGCCATTGTTTGAGG 64775 37 100.0 33 ..................................... TATTTTCATACTACATATAGTAATACTACTATT 64845 37 86.5 0 ...................G.......TT.A...T.. | T [64879] ========== ====== ====== ====== ===================================== ======================================== ================== 21 37 99.4 36 GTACTAGTGCATCTTCCATTAAAACAAGGATTAAGAC # Left flank : GCAGCAATCCTCTATTCAACGCCAAGAAATGGTATAATTTTGCGTTTTTATTGGTAATTATCAGTAAACCAGTGTGTTATAAACTTCAGAAATACGCACGAAAATACGCCCCATGCCAGGAATTTTCACAGCGGAGGCACTCAAAATGTTAAAGTTTGGTGTAAATATTTTACAATATTAGAGGCGTTGTTTTTGTGCCACAGTGTGTCTATGATTTAAGTTGCTCAATAGCTTATACACCCCGTTTTGTTGTTGAGTGACAGTTTTATTGCTGCAAAAACGCAGAGAAGTGTCTGTGAACAGCAGCTTAAGGCAACTCTTACTCCATTGATATTTAACACGTTTTCTCGATATTTTAACATAATAATTTTGTGCATTTCTGTAAAAAGTTATACCTTTGCATTCGCTAAAAAGGTACATAAAATTTGTTAAAATCAAGTCTTACGATGCACAATTTAGTCTTACAATGCACTTAAACAAAGCATTACCGTAGTTTTGCT # Right flank : CAAAACAATATGACCATGAAAGAGTTTTTGGAATAAGTTTAAGAAAGGTTATGTTATCTTTTGTTTGGTAATTTACCCTATTGTGTTGGGTACTCTCCTATTTATGATATGGAAACTATCGAATGCCTGTGGGGCTTATCCTTACTAGGTGCTAGTGCATTTGCTTTGATAATGTAGGCTTTAAAAACACTGCAATAGGCTTATTGCTGTGCGTTGCGCAGGTGAAATAAGCGGTGCAACGAGCAAGCAAAAGGCGCTTGGTGGGCGCTGACTTTGTATGTGAAGAAGAAAAAGAGGAGGGGAAATAATGAAAATGTCCTTATACCATTCGAGTAGATACAAGGGTTTCTGCTAGAATGGTATAAGGAACTGCTGTTGTTTTTAAGCACAAATAGGCTAAAAGAACAGGGTGTTGCGACTATGGGTGATGATGTCGACGTCTATTTGCTGGCCAATGATGCGCATAGAACGCAACTGGTCGGTGGAGATGGGGCAGACGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAGTGCATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 977-1817 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAIZ01000062.1 Prevotella shahii DSM 15611 = JCM 12083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 977 37 100.0 37 ..................................... TTAGTATCAGAACTACTAAAAGGATTAGTATATTCCT 1051 37 100.0 36 ..................................... TCCAACTCAATTTCCTATTATTTATTCTCTACAAAA 1124 37 100.0 36 ..................................... CATAACCGCAAGGTGGTACATTTTAATTGTACGGGT 1197 37 100.0 35 ..................................... CCTGACACATAATTCAAAATAAAGTACTTATTATA 1269 37 100.0 39 ..................................... TCATCATCACGCAACTGCGCAACGATGCTGAAAAGCGAC 1345 37 100.0 37 ..................................... TACGTGGGCAGCAATACGTCCGTTAGGAAATATCGCT 1419 37 97.3 37 ........................T............ AGTTCACTAGGATTTCTTTAACCTCTTTTACAAACTC 1493 37 100.0 36 ..................................... AGAGAAATAAATATAACTTTGCTTTCACCCTCTTTG 1566 37 100.0 34 ..................................... AATTTTAGATACTCCTAAAGAATTCAAGATCTTC 1637 37 100.0 35 ..................................... TCACCAGTGTTAGTGGCTGCGGATTGGTCACCAGT 1709 37 89.2 34 ..G.........A.......G..............G. ACGGCTTATTTTCTCCATAAACAGCCTTACATCC 1780 37 73.0 0 ..G.G......C....T....C.......CA..G.TT | A [1805] ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 96.6 36 GTACTAGTGCATCTTCCATTAAAACAAGGATTAAGAC # Left flank : GCATCCAGTTTAGTGCAGCGTTGCAAACTTACACATTTTTCTTATCATTTAAAAATTTTATCCATGTTTTTTTTACTGGCATTTGCTTATTATGCATGTTTATTTAGGCGTTAGCTGTTAGGTTGTTGTGGGTTATGTAGTGTTCCTGTTGTGTAGTCTTGTAGTTAAGATTTTAGTGTGAGGTGATAGGTTTTCGGGTGTTTAAATGCGTGTTATTTTGCGTTACAGATGGTTATTTATATGGTGCGCGCCATTACATTTATACAATTGCGCGAGGCTTAGTCACGATATGCGGTGTTATTGGTGTTACTTGTTTTACGATTATTATAAGTTGAGTCTGTGTTTTCTTATATTTTTAACAATAATGGTTTGTTGTTTTTGTATATTCTTAGTAATTTTGCACTCGCTAAAAAGGTACATAAAATTTGTTAAAACCAAGCCTTTCGATGCACAATTTAGTCTTACAATGCGCTTAAACTAAGCATTACCGTAGTTTTGCT # Right flank : TTGTAGCGTCAATAACTCAACCCTTTTGTGCTTTAGAGTGTACCAGCATTGTTCTTTCTTTTAATTTAAGAATAGCTAAAGAGCAGACTTTAGCTGTTTTTATTTCTGTCAATACTGCAATTATAATTTGTTAGGGTGGTAAACATATTTTACAAATTGTGTTTTCGTGCTTGCCACTTTTAGACAAACAATCCTCTCAAAACGTATGTAAAATGTGGCTAATAGGCGAAAGGGGCGGTGGGTTTTGCGCACTTGTTCTCCCCGTTTTTTGCAATTTACTATGCTTTTGCCTTTCTTTTTGAAGAAAAACTGTCCCAATTTTGGGCTCGAAACGTTATGAATATTCGGTTTAAAGCTTTGCAGATGTACTGCATTTAGCATCAAAACGCATTGCAATATGCAGCAAAACGCAATGCTAACTCCTGCAAAACGCAATGCTAACTCCTACTAAACGCAATGCTAAGTGGTGCTAAACGCGGGGTGAAATGTAGCAAAACGCA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAGTGCATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //