Array 1 23841-21429 **** Predicted by CRISPRDetect 2.4 *** >NZ_OALI01000020.1 Neisseria meningitidis strain Neisseria meningitidis isolate 23466, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23840 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 23774 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 23708 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 23642 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 23576 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 23510 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 23444 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 23378 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 23312 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 23246 36 100.0 30 .................................... ATAAGATGGGAAAATTACCATGAGGCCTGC 23180 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 23114 36 100.0 30 .................................... ACGGCATTGTTTATAGATTCCTCACATATT 23048 36 100.0 30 .................................... CTGCGAACATGGCGACTCCTGTTTATTTAA 22982 36 100.0 30 .................................... ATGAGATTTGCCGTCTGCTGTTTGACGACT 22916 36 100.0 30 .................................... ATGTACATGATTTGGCAGGATGGGCATTGG 22850 36 100.0 30 .................................... TTTCTCTGCCTGTATCAGGTTGCACAGGCG 22784 36 100.0 30 .................................... CGGCATCTACGACGAGGACGAGGCACAGCG 22718 36 100.0 30 .................................... GTAAGTGCTTTATTCATTATGGTTTCCTAG 22652 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 22586 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 22520 36 100.0 30 .................................... TTTGCTTCCTTTTAAAACTGTTTTGACAGG 22454 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 22388 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 22322 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 22256 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 22190 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 22124 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 22058 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 21992 36 100.0 30 .................................... CTTGATAAATGCTCCCCTGTTCTGCTAGAG 21926 36 100.0 30 .................................... CACGGCAGGCAGAGCGTTCACGCTCAATTT 21860 36 100.0 30 .................................... TACAACCCAATCGGACAATACCCGAAGCAG 21794 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGAAAAAAATAC 21728 36 100.0 30 .................................... AAGATGCGAAAATTAGCGCGGGACAGTGGT 21662 36 100.0 30 .................................... TTTTTTATTTTAATTTTTTATCCCCCAATG 21596 36 100.0 30 .................................... AGTTTTTAAATTTTTGATTTTGATTTTTTT 21530 36 100.0 30 .................................... GCGTGATAAACGGCTTGTTCATGTTTCTGT 21464 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //