Array 1 1034366-1035858 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061126.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S304 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1034366 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1034427 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1034488 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1034549 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1034610 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1034671 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1034732 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1034793 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1034854 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1034915 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1034976 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1035037 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1035098 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1035159 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1035220 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1035281 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1035343 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1035404 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1035465 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1035526 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1035587 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1035648 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1035709 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1035770 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1035831 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1051990-1053893 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061126.1 Salmonella enterica subsp. enterica serovar Typhimurium strain S304 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1051990 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1052051 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1052112 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1052173 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1052234 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1052295 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1052356 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1052418 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1052479 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1052540 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1052601 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1052662 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1052723 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1052784 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1052845 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1052906 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1052967 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1053028 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1053089 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1053150 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1053212 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1053315 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1053376 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1053437 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1053498 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1053559 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1053620 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1053681 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1053742 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1053803 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1053864 29 96.6 0 A............................ | A [1053890] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //