Array 1 623945-626752 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822014.1 Streptococcus thermophilus isolate STH_CIRM_36 chromosome STHERMO Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 623945 36 100.0 30 .................................... AAAAGCCTATGTTTGCCCACTTTGTGGAAG 624011 36 100.0 30 .................................... TGTCACTTTCTCTTTCTGGGTTGTGCCAAT 624077 36 100.0 31 .................................... CATACTTTTCCATCTGTTTGTTGTTTGAAAA 624144 36 100.0 30 .................................... TGAGAGTGTCTGATGGATTTATTGGCAGCC 624210 36 100.0 30 .................................... GGGGTTATTTTCCATTTTACCGTCTATCTA 624276 36 100.0 30 .................................... TATCACGCCCATTTTCATTTCGCCATCTGT 624342 36 100.0 30 .................................... AACATTTTAATATAATTTCTAAATCTATTG 624408 36 100.0 30 .................................... TACAAAATTCCTTCAAACGCTATTTATTGA 624474 36 97.2 29 ............................C....... AGAGTTTGAAAATTATTTTTCAGTTTCTA 624539 36 100.0 30 .................................... TTCCTCATCTTTCTCCGCTTTTGCTAGCTT 624605 36 100.0 31 .................................... TTGAGCGTTCTAGTGTGTGGCTTGTAATGAA 624672 36 100.0 30 .................................... TGAAAGAAATACAATACAACGATAATGACC 624738 36 100.0 30 .................................... CTAGTTTTAAGAGATAGCTCTCTAAGTAGG 624804 36 100.0 29 .................................... AAATTCGACATAAGCACTACAGTTATATT 624869 36 100.0 30 .................................... CTATTTTCGAGAGAACGTCAGTCATTTTAA 624935 36 100.0 30 .................................... GTGCTAACTATATCAGTCGCATCAATAACA 625001 36 100.0 30 .................................... GTGCTAACTATATCAGTCGCATCAATAACA 625067 36 100.0 30 .................................... TTAGCGGTGATTGGAATAGAATAAGCGAAT 625133 36 100.0 30 .................................... CTTCTACAGCAGTTTAAGACACATTATCAT 625199 36 100.0 29 .................................... CGTATCGAAAACGGCGATAATCCAACAGT 625264 36 100.0 31 .................................... CAATACCTTTTTTTAATTCATCTTGATAAGT 625331 36 100.0 30 .................................... TTAAGAACAATATCATCAATACGACTTTCA 625397 36 100.0 30 .................................... CATCTATCAAATTCAAATTCGGATAAACTA 625463 36 100.0 30 .................................... GACTTATCTTGGAAGGTAGTGAAGGCACTT 625529 36 100.0 30 .................................... TCCTTGCCATCTGCACTGTAAGCCCAAGCA 625595 36 100.0 30 .................................... TAGTACGCATAATCAATTCATCAAGCTTGA 625661 36 100.0 30 .................................... GTAGTGACCCAAAATTCTATGACCTTGAAA 625727 36 100.0 30 .................................... AGATTGTGGTGCTTACGGAAAATTCCTTGT 625793 36 100.0 30 .................................... TGGCAAGAAGTGTAAGAGATGCAATGGATA 625859 36 100.0 30 .................................... CCGAGGTCACTTTAGAACCCACAAAATAAG 625925 36 100.0 30 .................................... ATGAGAGAACACAGTATAGACCCTGATACA 625991 36 100.0 30 .................................... CAGTATTAATGAGGTTTGGGTGGTCATTCC 626057 36 100.0 31 .................................... CCATACTCTCTATCAGTTCATTTAATTCTTC 626124 36 100.0 30 .................................... TGAGAGTGTCTGATGGATTTATTGGTAACC 626190 36 100.0 29 .................................... ACCTCATACATGGGGAAAACTTGTAAGTA 626255 36 100.0 30 .................................... TATTTCACGAATTTCTACACTTTTCAACCT 626321 36 100.0 30 .................................... CTGAAACCTTGTTTTGAAGCGCTTGGAAGT 626387 36 100.0 30 .................................... GTCAATTGATACTGCAATCTCTTTAACATT 626453 36 100.0 31 .................................... ACTTCAATATGGTCAACATCTTGATCACCGA 626520 36 100.0 30 .................................... TAATATGTCGCTCTACTGATTCCAAAACGG 626586 36 100.0 30 .................................... ATGAATTACATTCATGATTTTATCGAGTTT 626652 36 97.2 29 ...........................T........ CGTGCCATTGTTTCGGTCGGACGTGGGCA 626717 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAACATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATGTTCTCAGACACCTGATAAGGAACTATTACAGAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACATCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGATGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 866385-866709 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822014.1 Streptococcus thermophilus isolate STH_CIRM_36 chromosome STHERMO Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 866385 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 866457 36 100.0 35 .................................... TTTGAATAGTCTTTGAATCGCATTTGAACCATATA 866528 36 100.0 38 .................................... AGGTTTTTTGCCATAGATTTTCCAAGACCTTCCCAACT 866602 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 866674 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 96.7 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATTCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAAGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAGTATTGATACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //