Array 1 29279-29606 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLTR01000166.1 Providencia sp. wls1948 599, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29279 28 100.0 32 ............................ TATTGGCAATTGATAGTAGGGAACACTCCCCG 29339 28 100.0 32 ............................ TCCCCACAAACTATCTCAACATCCCGCACCTG 29399 28 100.0 32 ............................ ATATGATGAGGCTACGTTCGAAAAAGCGTGGA 29459 28 100.0 32 ............................ ATTATAAAAGAGCATATATTCGATAAAATCAG 29519 28 100.0 32 ............................ TAAATATATGGATTTATACGCTAGTGTTAAAA 29579 28 96.4 0 .........................G.. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTAAATCGGCGTTAGATAAGATTTCAAACATTGAGGCTAAGCAAGGGTTGCAATTGCAAGAAATTGATAAGTTAGATTTCCTTGCAGATACGCGCAGTATTCAAAATAGTCAGCGTATGAGTAATTTGTTAGATACAAATTGGACAGGGGCAACATCAGACTATTATAAAGAGATGGCAATGTTCCAAGCGTCTCAGGATATCTTTAAAGATTTAAATAGCATGTCACTGTTTGGCGGTCGCTAATTTATTAGCCAGCTTCAATTGGGTTGAGGCTGGCTAATTGGTTTACCCACTTCTTTTTCCCTCTTGTTCATATTTTTCCTATCAAACCATTGTATTTTTCTTCGTATGTTTTACCCTTTATTTACCTTTTTATTTTTGCTCTTTAAAAATTTCTGATAAAACAAGATGTTACTAAGGTAGTAAAAAAAGAAGGTATTTAGCCAATAATTAGCTTAATTTATTGTTGTCTAACGCATTTTATTTGCTAGGCTATC # Right flank : TCACGAAATCGACGCTATATATTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4139-3571 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLTR01000362.1 Providencia sp. wls1948 1192, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4138 28 100.0 32 ............................ AAGGGGATCGAGTACCCAGAGGTGCAGCGATA 4078 28 100.0 32 ............................ TGCCAATTGGCATTTAGTGGTAGGGAACACTC 4018 28 100.0 32 ............................ ACGCTCGATGTGCTTTGGAACTTCATTCTATT 3958 28 100.0 32 ............................ AGCAAGCGCCTTGATAGCAACGTTAGCCATGC 3898 28 100.0 32 ............................ ACAATACTGAAGAATAGATGCTTGTAATGTTG 3838 28 100.0 32 ............................ GAACGGCTCTACATAACAACGATGCTCAGGAA 3778 28 96.4 32 .................T.......... CATCAGTAGTAATAACTTCGGTACCAATATGT 3718 28 100.0 32 ............................ ATTATCTGACGGTTCTCCGTTCTGCTGTATAA 3658 28 100.0 32 ............................ ATCGACGGTACTCAGTTCCGTTTTGCCGACTT 3598 28 89.3 0 ...........T.......A....A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATAGGAGAACTAACAGTGAGCGACAACGAAATGGTCTATACAGCCACTTAGATTGCTCCAGTATTTACTGAAGTACCAATCTTGGCACTACTGAGTCTGACTGGAATTCTGTGAATGAAGATGAACGAGAGGAGGCTATATCGCATTGTATTGCTGACATTGTTGATCTGTGCGTAGCGCCAAAAGACGATTAAAAGGCAATACTAATGAAATGACTACGTCAGAATGGTAAAGCTGAGCAGCGGGACAGGCACAAGTAGCATGGCTTAGTTAACGTTGATGTAACAAAGCATTACAAATAGTTCAAATTTAAAATATCGCTATTAATTTTAGGTGGGGATACAAGATGTGCTGTTTTCCTCTTTTTTACCCTTTATTTTCTCACTTAGAATATATTGGTTAAAAATCAAAAAGTTAAATAGTGTTGAAGTATAAAAGGTATTTCTCATAAATCAGGTGTAATTTATTGTTGAATATGGTTTTTTTCATGATAAGTTATA # Right flank : ATAAGGTTTGATGACATTAACTGGTTATATAATTTACTTATTGGCCTGAACACCCAATCCTAACATTTGCTGTGTCTACTGAGAGAAAAAAGTATGGCACAGCATAGCGTTATCAAAATGTTTAACGACACTCTTGTACCGGCTAATCCGGCGGCAACGGATTTTTTGCATCCCAAAATCAAGTGTGATGATGTACTTTCGTCTGATTTCAAGAAAGCTCGTAACCCACGATTCCATCGCAAGTACTTTGCACTCCTCAATCTAGGGTATGAATGCAGGGAACCTACAGGCGGCACTATTTCGCCTGAAGAAAAAGAACTCGTTCGCAGCTACATTAAATTCCTAGCCTACTACACAGATAATGATGATGCTCTTCAGTTTGCTCATTAAATCGCATTAGAATTGTGTGAAAAAGAAAGTTGTTACTGCTTACGCACTTATCAAGATAGAGTTAAAGCATCGCTCAGTGTTGCTGAGTTTATGTTGTATCGCCCAATGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 685-1012 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLTR01000219.1 Providencia sp. wls1948 822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 685 28 100.0 32 ............................ CCGCGCTTGCAGTAACAATCTCGGGGCGTTTC 745 28 100.0 32 ............................ ATTAATCGACCATTGATAACCACATGGTTTTC 805 28 96.4 32 A........................... TACACGGCAGTGAATGTTAACAGTAAAATTAT 865 28 100.0 32 ............................ ATGCTGCGAGTTGTCGATGAGTTAAGTAATGC 925 28 100.0 32 ............................ TGAAATTAACGGGGATTCCGTGAATGTATCTA 985 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTTATATTTTGTGAAGCGTAATACTGTTAATATTCAAAGCATACTCTTCGTATTCCAGTGATTATATTTTATTTCTGATGATAAATTGCTTCTGTTTTTTAATGAAGAGGTTATTCACAAGATGATATAGATTGCTTTTACACATGAACAAAAGTATTTATCTAATAGAGTTTAAATACAAGAGACAAAAGAATTACGTTAGGTGACTATTCTTTTGATAGCTAACTTAGCGAGCCGACTTATGCAACCGATGAAAATCGAAAAATTGGCAGAAGGGCGTGTGTTATTCAAAATTGAAAATTCTTAACGTATTTCTATCTTTTTTGAGGGGATGATATCAGTTTATATAAGGTTCAGTATTTTTTACTCCTTTATTTTTCTGGCTGAAATGTTTCTATTAAAAATCAACTGGTTATATGTCATTAAAAAATAAAAGGTATTTTCCACAAAATCAGATGTAATATATTGTTGAACTTAGATTTTTTGCTGATAATTTATA # Right flank : ATGTGACCTACGGCATAGAAGGCCGTAGGTCACTAGTGTGCGATTATATCAGTGGCTCAAAATCCTCTTATCACTATATGCCTGCAATACTGTAAAAATTATTATCTGTTAGTCTTAATACAACATATAAGTTATTTTTATGATATGGATTGGGATCTGCTTCCCAAAATTACCTTATACACTATGAAATTAAAGGCGTAACGATAGACGTAGCCTAAGTTAAATTGTATTAATATAGCAAGGTGGCTTATCAAAACAAACGGAAGGTTGGCTTAGCATGGATGATCTCTCTCCGTCAGATTTAAAAACAATCCTTCATTCTAAACGTGCCAATATGTATTACTTGGAGCATTGCCGAGTGATGCAAAAAGAGGGGCGAGTTCTCTATTTTACTGAAGCAAAAAATGAAAATCTTTACTTTAATATTCCGATAGCGAACACAACGGTTTTACTATTAGGAACCGGCACCTCTATTACTCAAGCGGCGATGAGAATGTTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10026-10353 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLTR01000219.1 Providencia sp. wls1948 822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10026 28 100.0 32 ............................ TATTTTTGAATTTGTTGATGTTTCTTAACCGC 10086 28 100.0 32 ............................ AATCCAATCATCACTTTTAACAATCCAATGTC 10146 28 100.0 32 ............................ TGGTATTTGGAGAACAGATGCTTATGCCGATG 10206 28 100.0 32 ............................ TAGAATGAACACTCTGTCAGGGTGAATATTGA 10266 28 100.0 32 ............................ TCGAGGAAAAATAACCGGTACATCCACCAGCA 10326 28 78.6 0 .................T.....GTTGG | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTCGATTCTGACAGTACCAGAAAATGCCATACCAGTCAGTTATGTACGACAACATGTGAAAGGTAAAAAACGGACTGAACTGGATATACAAAAGAAAGCGCAATTTCTCTCAATAAAATCGGGGCAGCCTGCGGAAGTTTGCTTACATGTGTTGAGGAAAAATCAGGTTAATGAATTTAGTCGATTGCCTTTTATCTGGATGGAGAGTCAACAGAGTAAATCTAAATATGAAGGAGCAATTCATCGCCCGTTTCCGTTATTTATTCGCTGTATTTCTGCGGGAAAAGCACAATTAGGTGGGTTTAACTGTTATGGATTAAGTCAGCAAGTCGGAAGAGATGTTGAGTTAGCGACAGTTCCTCATTTTTAACCTTATTATTTTGCTCTTTAAAAATAAGATTATAAAACAATGAGTTACAATTAACGGTAAAAAAGAAGGTATTTTCTCTAAAATATCACTAACTGTTTGTTGTAACTTATTTTTTATTTGATAAGCTCGC # Right flank : TGTTTTAAATAAGTGAAATATACCATAATCATAAAAATGGGAACTTATAGTCGCTAGTGTTGTTTGTGAGATATCATCCCATTAATAGTTAAAGCTGAAGATAATATATAAAAAGAATCTATCAATAGAGCAGTAAATAATACTGCACATCAAATACGTAACCTAATAAATAGAATGATATTATTTAATAATAGTCAAATTTACGTTTTAGTTGTTATGATTTAGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //