Array 1 39012-37722 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLPV01000049.1 Streptococcus iniae strain QMA0466 NODE_16_length_45426_cov_121.059_ID_2391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39011 36 100.0 30 .................................... GATTTCTGCTACATCCTTACCTACAAAGTA 38945 36 100.0 30 .................................... AGAGCCAATGTATCTATTACATTTTCAACA 38879 36 100.0 30 .................................... ACGATTGCTTGAAAAAGCTGAAGAAGTAAC 38813 36 100.0 30 .................................... TACGAATCGTGGGTCGATTCGAGCCAGTAT 38747 36 100.0 30 .................................... TCGCTGGTGTCGGATCTAATATGACTAAAT 38681 36 100.0 30 .................................... GATAAAGATAATCATGCTATCGATGCAACA 38615 36 100.0 30 .................................... AACAATAGGAGGCGCAATGTCTGGCATAGT 38549 36 100.0 30 .................................... TTAGGAAAAATGACAGTTCCATAGCAATAT 38483 36 100.0 30 .................................... GGAAGAAGAAGTTAAACGTAATCCATACTA 38417 36 100.0 30 .................................... AGGTGTCAAACTTATCACAGCTCTTGTTCA 38351 36 100.0 30 .................................... ACAATTATTTTATGTCAGATATTGATGAAT 38285 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 38219 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 38153 36 100.0 30 .................................... CAAGTCTTGCAACAACAAGTATCCACTACA 38087 36 100.0 30 .................................... ATATATATCAATGGAAATACCAAAACGTTT 38021 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 37955 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 37889 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 37823 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 37757 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.6 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTACACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //