Array 1 1-759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEVV010000016.1 Escherichia coli strain BfR-EC-17844 16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... AAATTTATCGAGATCGGCAGGGGTTACTGACA 60 29 100.0 32 ............................. GGATTCATCACGCGGTTATCCGGGGGCCGTTA 121 29 100.0 32 ............................. GTGGTTGCGGGGTTATCGGTGGTAGTCACAAT 182 29 100.0 32 ............................. TTTGTTGTGATGCCAATTACAATACGTGATGC 243 29 100.0 32 ............................. CTCCAGCTCGATATCACACGACGCTATATCAG 304 29 100.0 32 ............................. GAAACAGCGCCCGCCGGTGCTGCGTTACCGTG 365 29 100.0 32 ............................. CCAACAAACTCATTTGCACTGGATTCGTGGAT 426 29 100.0 32 ............................. ACCGGCGCAATTGTTTTTCAGCAGCACCCGGC 487 29 100.0 32 ............................. TATTTTCTTTGTTGCGGTAGGCAATATCGCCA 548 29 100.0 32 ............................. GTATTTTGTCACGACCAGCACGAGGCCGAATA 609 29 96.6 32 .............C............... CCCCAACTCATGCCCACATGAAAAACGTTGAC 670 29 96.6 32 .............C............... CCGCAAAAGGTATTATTTTTATCCGTCAGTAC 731 29 93.1 0 .............C..............A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GAGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : | # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGAAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCTGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26814-27818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEVV010000016.1 Escherichia coli strain BfR-EC-17844 16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26814 29 100.0 32 ............................. GGGGGGCAATAATATGTGCGGCGGATCACCAG 26875 29 100.0 32 ............................. TCGGAAAAATGGCTGGCCTCAACGGTGAAAAC 26936 29 100.0 32 ............................. CCAGGGTGAAACTTTTCGCTGACGTAAATAAA 26997 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 27058 29 100.0 32 ............................. TGATGGGCGAATACAAGCGCTGGCGCAACGAG 27119 29 96.6 32 ............................C GGCATTCTTAACCGGCGCAACAAGGGGGGCGC 27180 29 100.0 32 ............................. GTTAACTCCAGGTGGCGCGGCAGTGTTCAGAA 27241 29 100.0 32 ............................. GCTGGCTGATTCAGCGTGACGGGGCGAAATAT 27302 29 100.0 32 ............................. CCTGCGGTATAGCGGCTCTTTTTTATGCCCCT 27363 29 100.0 32 ............................. AAATGATAATGCTGGCGTGTGGGCGTGCCGGG 27424 29 100.0 32 ............................. AATAACACTAATTTTTTACACGGTATTCGCAC 27485 29 100.0 32 ............................. CTCTGCTCGGAGATTGCCAGTGAGTGAAAACG 27546 29 100.0 32 ............................. GAATTGAACGTCACCGGCACGGTGCCTTTTCG 27607 29 100.0 32 ............................. CTCATATTCGGATTGATCGTGTGTTTCGGTTT 27668 29 96.6 32 ............................T GCGTATATCTGTTGATGCGCACGGCGTGGCGG 27729 29 100.0 32 ............................. AATGATTTAATACCAGACGCAGAGTGCCACAC 27790 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGTGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAACGACGTTCTATTCTTCCAGGAAGTGCTTTATCAATATGTTGCTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //