Array 1 76590-76441 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCJ01000012.1 Cronobacter sakazakii strain MOD1_AS-13 AS13A_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76589 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 76529 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76468 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 279697-278630 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCJ01000001.1 Cronobacter sakazakii strain MOD1_AS-13 AS13A_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 279696 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 279635 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 279574 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 279513 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 279452 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 279391 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 279330 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 279269 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 279208 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 279147 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 279086 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 279025 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 278964 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 278903 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 278842 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 278780 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 278719 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 278658 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 308785-306133 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCJ01000001.1 Cronobacter sakazakii strain MOD1_AS-13 AS13A_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 308784 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 308723 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 308662 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 308601 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 308540 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 308479 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 308418 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 308357 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 308296 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 308235 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 308174 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 308113 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 308052 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 307991 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 307930 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 307869 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 307808 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 307747 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 307686 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 307625 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 307564 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 307503 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 307442 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 307381 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 307320 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 307259 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 307198 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 307137 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 307076 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 307015 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 306954 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 306893 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 306832 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 306771 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 306710 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 306649 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 306588 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 306527 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 306466 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 306405 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 306344 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 306283 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 306222 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 306161 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //