Array 1 32724-35188 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXNK01000015.1 Methylacidiphilum fumariolicum strain Rib contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 32724 37 100.0 38 ..................................... TTCTTTTTCGGCTTTCAGTTGATGAAGCCTTCCTTTAA 32799 37 100.0 39 ..................................... CCCGTAAATCACCCCACCTTTTGTTAGCATATGAGCTCT 32875 37 100.0 37 ..................................... AATTTATCCCACTCATACTTCAGAGTAACTTCTTCTT 32949 37 100.0 40 ..................................... TGCCCATGATCTCATATGATATGTTATTGAAATAATACTT 33026 37 100.0 38 ..................................... CTTCTAATCTTGATTGCTGACCGTTTTCCCCGCTTAAG 33101 37 100.0 37 ..................................... AAGTTCAAAGTAAATCCCATCCAATTTTCGATAGATA 33175 37 100.0 37 ..................................... CAAGCCCTGAGGGTGAAGACTTTTTCCTGATAAAGTC 33249 37 100.0 40 ..................................... CTGCTATTTCACCTTCACCTTCTAACTTGAACCGCTTCTC 33326 37 100.0 39 ..................................... AAGAAACTCCAAGAGCCTTCTTCAAGGCCTCCTGGAGGC 33402 37 100.0 42 ..................................... CAACAGCTTTTTTGTAATCGCCTTGAAGAGAATTCTCCAAGG 33481 37 100.0 42 ..................................... CCTCATCCTCAATAGGGGAAAATTTGTCCATAATTTTATGAG 33560 37 100.0 39 ..................................... CCTCATCTAAAGCTCCCCATTCACGATACATAGCGTTAA 33636 37 100.0 37 ..................................... TCAAGTCCCAGTCTCTTTTCGTCATATATCCTCCCTT 33710 37 100.0 39 ..................................... ATTCCTTTTCAAGTTTGCCTTTATTCTTCTCACTCACTC 33786 37 100.0 40 ..................................... ATGTTGTTATGATAATATTTCATGGGGATTTTGTGTTCCC 33863 37 100.0 35 ..................................... TTTCTCATCTTCTGGCCACTTCCATAAGTTTTTCC 33935 37 100.0 37 ..................................... ACCTTCTCTTCCTTTAATAGTCGAATATAAGCCATTA 34009 37 100.0 38 ..................................... TTAAATGTTTGGTACAGCAGGAGAAACTTCCTGCTGTA 34084 37 100.0 40 ..................................... AACTCATTCCAGTTTTGGAACTCTGGCTTACCCTCTGGTA 34161 37 100.0 42 ..................................... TTTCCTTTGTTACAGGGTCAAAATTCGACCACTGGCGAAGAA 34240 37 100.0 41 ..................................... AAATAAATGCCAATACATATCCTCCCCTAAGGGAAGATATG 34318 37 100.0 39 ..................................... TCGATTAATTCTTTCAACAAAGACTCCCAATTGTGGTCT 34394 37 100.0 38 ..................................... AAAACCAAATATTTCGACCTGCTATATTCCGGATACTC 34469 37 100.0 38 ..................................... AGATAAACTTCTTGGCTCTAGGGGATTGAACCCTAAAG 34544 37 100.0 39 ..................................... ATACCAGCGAGCATTTCTGGCCCGATAAGCATGACTTCT 34620 37 100.0 39 ..................................... AGACCATACACTATCACTTCCTCGTCAGAGTAGTTGACT 34696 37 100.0 40 ..................................... TTCAGGAGTGAGGTAGTATCTCTTCATATCCTCATCCCAA 34773 37 100.0 39 ..................................... AATGTCTCGAATCATCTTAATTTCCCAGTCTGTTAACAT 34849 37 100.0 39 ..................................... ACCAAGAAGCTTCAGGCAAGGGGAATACATATAAAATGT 34925 37 100.0 37 ..................................... AAAACTCAACCCCAATAGACTTCTTCAATGCTTCCTG 34999 37 100.0 38 ..................................... TACAATAAAGATAAAGGAGGTAAAAATGAGGGAAGATT 35074 37 100.0 41 ..................................... CCAGGAACTGGGGGCTCGTCACAATATTTTGGTAACTCATA 35152 37 91.9 0 ..........................ATG........ | ========== ====== ====== ====== ===================================== ========================================== ================== 33 37 99.8 39 GTCGGAATAATGGATGAAGCCGAAAGGCAATTGAGAC # Left flank : GGAATAAGAGTCCAGTTTAGCGTTTTCGAATGTTATCTTGAAGAATCAGAACTAGAAGAATTGTGGCAAAAGCTGCTTGCGGAAATTGATCCTAAAGAAGACAGGATTGTCGCCTATAAAATAGATGCTAGACTAGCAAAGGAGATTAGAACTGCTGGAACAATGGTGTGTTCTGAAAAAGTAATCTGCTTTTTGGTATAAACTCTATTGCAAATTGGAAGAAATTTTTATATTTACCTAGCTTGTATCTTCTACTTGCATAAAGAATGACGGTAGTTTTTTTGTGTTTAAAAATGCAAAAATGGTTTTTTAGGTATTAACACCAAACCACTAAAAAATAGCCATGCCAATACCTAAAGTTATATTATTGAATATAAATGACTTATTAAACTTTCTGTGTTTTTGGGCTAATATAAAGCATAAACTGTACCAACATAAAATTGGAATCAATGCCTATGAGGTTTTTTATTTTTTGATAATCAAGATGTTAGAAGACCGCA # Right flank : CTTTCTCTGCGAACTGGCATTCCGCTTCCTGGCAAATTTGGGGATTATAGGCATGGACGACTCCTTTCCGGCCTCTTCTTGCTGGTTATCCTGCCTTAATCTCGATGCTGCGGATCTTGATTAGGAAGATTTCTGGCCCTACCCAGACATCCTCGACCAGCATATTGCTCGCATGTCTCCGGTTTCGCTTTGTAATCCAGCCGTGATAGACGGGATCTGGCCCCAATGTCGAACGCTCGAGTACAGCCAGAGGTAGCTTTCGAGCTTTTGAGATCCCCGGAAGCTCCCGCTCTCCCAATGGGTGTGAGAAGGGAGAAGACGAGGACCATCATCCGTCAACAAGACATGCAGCTACAACCAGGTTCTCTCCTTATGACGCATAGGTCGGCAGCAGGACAAGCGGGAATGAGGTGTGCTTGCTTGATCGATTGAATGGTGCTCTTCAATCGCGATCGCTGACGAACGATCTGTTTGCGGCTATTTCCCTGTCTGTGCAGGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAATAATGGATGAAGCCGAAAGGCAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 19673-19994 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXNK01000041.1 Methylacidiphilum fumariolicum strain Rib contig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 19673 35 100.0 37 ................................... CTCCTGTCATTGAATTTTATGGTTATCAGTTCTAATC 19745 35 100.0 37 ................................... CTTGCCATGACTGACTTCCATGCCAGGCCTAAAATCA 19817 35 100.0 36 ................................... GTTTTCTGCCATGCTGGAAGGAATACCACCTGGATG 19888 35 100.0 36 ................................... GATTGGCCAATGTGTGGCCAGGAAGGAGGAAAGATG 19959 35 91.4 0 ............................A..G..C | G [19990] ========== ====== ====== ====== =================================== ===================================== ================== 5 35 98.3 37 GTTCCCTCAGCTGAAGAGCTGAGGCTTCGTTTAAG # Left flank : GAACCGTTACGCCGGTTGTTTTTCCGGGGCATTGGCAGCGGCGAGGTCGAAATAGGGAAGGTCGTTTACACACAATGTTGGCGGCGATGTTATCTGAGGCAGGCATTGAGGAGAATAGCGTAGAGCAATGCCAGGTGCGGCGAGAGCCATTTTTCAAGGGTTGCGAGTTGGCCCAACAAGCCAAGGCTCCACAACATCTTCTCGCTTTACCGCGAATGCATTTGGAATTAGTTTTAAAAGAAGAGGTTCAGGGGCCTATGCTCCTTGGCTTGGGACGCTTTGCTGGACTAGGTTGTTTGGCTGGTGTTAATGTTCTTTGAGAACCGTTGGGTTTGCGAGCGCTTCGATGCTCATCGAGGGTAGCAGTCGTGCTCGAACATTGCGTGACAATGAGTTGTGAAAAATTATATGTGGTTATGGCAGAAGCGATATGTAGGTGGTGACACACGCTCGCAAATGTGCAAATTGTGTGTTGAGTATCAATTGGTTGCAAGGCGGCA # Right flank : CTCATGATGACTTGTGAGCCGGTTGGTAATAGCCGGCTCATTTGTTTTGTCAGCTTTTCAAAAGCTCACCCTAGAGAAATTTTTACAGGCCCACCATATTTGGAAAAAGGAAAAAAATAGAGCACTAAGCGCCAGGATGCTCTATAACTCGATTCTTTAACCTGCTAGCTATTGATGATGACACTCGCCAAGTCGTATAATTCGATTTTAACGAATCTTCCAGATATCATGAGTCTAGTCACACCACGTTCGCAACATCTTCTAGCTTTACCGTGAATGCATTTGGAATTAGTTTTAAAAGGAGATGTTCGGTGGCCCATACTTCTTCGCTTGGGACACTTTGTTGGACTAGGTTGTATGCCACCCTTGGTCCAGGATCGATTTGTTCATCCGGCTCTTCGCCTGCCCTTTCTTTCCTGGATTTTCTCTCTTCTACTTGGCTGACCGGGTTATGTTTTTGATCGGCAAATCCTCTATAAGCCCCACCGCGTGGGCTTTGC # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCAGCTGAAGAGCTGAGGCTTCGTTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //