Array 1 118006-117550 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVDG01000014.1 Cronobacter sakazakii strain MOD1_LR702 csakLR702_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118005 29 100.0 32 ............................. CGAGAGGTAGTAAGCAGCTTCTGTAAGCTCAT 117944 29 100.0 32 ............................. CCCGCACCAGTTCTTACAACCGAGGGACGCCT 117883 29 100.0 32 ............................. GAAACAGCCAATCAATGATGCCTACATCCGGT 117822 29 100.0 32 ............................. CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 117761 29 100.0 32 ............................. ACCTTCGACACCGGGTTTCAGACTGACCAGCC 117700 29 93.1 32 .A..........T................ CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 117639 29 93.1 32 .A................C.......... GCACCAGCATTAACGCCGAATACATAATTATG 117578 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGTGACGTATCGCGTCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAGTGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATTAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTAATATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145788-144293 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVDG01000014.1 Cronobacter sakazakii strain MOD1_LR702 csakLR702_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145787 29 100.0 32 ............................. CAATCGAGGAATTAGTGACTAAACAGGCAGCC 145726 29 100.0 32 ............................. ACATCTTCATCCTAGCCGGTAACTATCTGCAA 145665 29 100.0 32 ............................. CCAACTCAAACGCCGAGCCGATTCACGTATCT 145604 29 100.0 32 ............................. CCATTAACATCTATCAGCGCAAACATACCGGA 145543 29 100.0 32 ............................. GTTCGCGCAACTCAGCGAGCGGCGGCAGCCGA 145482 29 100.0 32 ............................. GCAGGCTCAGTGGTCAGAAGCTGAATGGTCGA 145421 29 100.0 32 ............................. CAGCCAGCGCCGGAAATAAACGTTCATATCGA 145360 29 100.0 32 ............................. AAACTGACTCTACAACACCTGGATACCTGGGT 145299 29 100.0 32 ............................. GACGCTTTGACGGAATGACGGACATGTATGAA 145238 29 100.0 32 ............................. TAGGGAATCAGCGCCAGCATTTTGCGCTTGTC 145177 29 100.0 32 ............................. AAGTGATAACAGTGCTATTGCCGTTTTTTGAA 145116 29 100.0 32 ............................. GCTAGTCAGGTCGTTGCCAGCTTCATGCCCTC 145055 29 100.0 32 ............................. AGCGAGACGGTCGCAGCGTGTAATCTACAGTC 144994 29 100.0 32 ............................. ACAACTGGCAACTGGTGGATATCGAGACCACT 144933 29 100.0 32 ............................. CCGCGGCGGTATTCCCTGCAGGCCTGGTTATT 144872 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTAACAGGA 144811 29 100.0 32 ............................. GCGCGACGTATCGCACCGTTGCGCAGGATACC 144750 29 100.0 32 ............................. GTTATCATCTGAATGCCTAAAATTGAGGAATT 144689 29 96.6 32 .C........................... GCGGTTGCACTCCACCGCGAAACCCTCGAACC 144628 29 100.0 32 ............................. TTTTCGAAATTGAGCATATTTAACCTATGATT 144567 29 93.1 32 ........T..A................. ATTTTCGAGCAAAGAGGCAACAGGTCTTCATC 144506 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 144445 29 96.6 33 .C........................... AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 144383 29 93.1 33 .C..........T................ AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 144321 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.9 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACTTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAACTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGCAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : AACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAAGCTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTATTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 134365-134572 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVDG01000018.1 Cronobacter sakazakii strain MOD1_LR702 csakLR702_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 134365 28 100.0 32 ............................ AGGAAACGGCGGTTCTGCCGTTTCAATGTGGC 134425 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 134485 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 134544 27 92.9 0 ........................-..T | T,G [134564,134567] ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //