Array 1 799687-800646 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP022392.1 Streptococcus iniae strain QMA0248 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    799687	    36	 100.0	    30	....................................	AAGCGGAACAGATGACAATATATGATTTTT	
    799753	    36	 100.0	    30	....................................	GCTGAAAAGACTGCTGTACTCGTTGGAATA	
    799819	    36	 100.0	    30	....................................	TCCTTTTTGAGTAAAAGCTATTGTCTCATT	
    799885	    36	 100.0	    30	....................................	TATACGACTATAAACAGTTGCCAGCTTCAT	
    799951	    36	 100.0	    30	....................................	TATGGAAAATGTTGACTTCCACGGTAAATC	
    800017	    36	 100.0	    30	....................................	TAGATCCCCGCATTTTTGACGAAAAAGCTC	
    800083	    36	 100.0	    30	....................................	CGAAAGGTACTATAACCGATGAAGATATTA	
    800149	    36	 100.0	    30	....................................	ACAATTATTTTATGTCAGATATTGATGAAT	
    800215	    36	 100.0	    30	....................................	GTGTTCGCCGAATAAGTAGAATTAAGAAGC	
    800281	    36	  97.2	    30	..........................C.........	CCTGCAAAAGATTCATATGCGATTAGTTAT	
    800347	    36	 100.0	    30	....................................	CAAGTCTTGCAACAACAAGTATCCACTACA	
    800413	    36	 100.0	    30	....................................	CGGTTTAGCTGCTCTTGAGAAGATTGTATT	
    800479	    36	 100.0	    30	....................................	TTAGTATTAAATATAATATCAACACCTTTA	
    800545	    36	 100.0	    30	....................................	TACAACAGTACCTATAAGTGTGGCTACACC	
    800611	    36	  75.0	     0	................T.....TG..T.T.TTT..G	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	  98.1	    30	GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG
# Right flank :  GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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