Array 1 47174-46962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVYQ01000016.1 Rothia mucilaginosa strain 1211_RMUC 305_65084_1729696_109_,...,145_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47173 29 100.0 32 ............................. GCGAGAGAGGGGCTGCACCTTCTAGCTACCGC 47112 29 93.1 32 .CG.......................... GAAAAGAAAACTACGAAAGAAGATACTTTCAT 47051 29 89.7 32 ...A.................G.A..... TGTGCGGGAATGTCCTCATTGTCGAGGGCTGC 46990 29 82.8 0 ..G.......CG..T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 91.4 32 GTTTTCCCCGTATGCGCGGGGATGAGCCC # Left flank : AAGCCGGACTCAACCGGTCTATTCTGGATGCCGCTTTTAGTACGTTGCGCCGTCAGCTGGAGTATAAGGCCAGCTGGTACGGCTCACAGGTACAGATTATTGACCGCTTCTTTGCATCCTCTCAGACGTGTAGCGCCTGCGGAGCACGAGCGAAAACCAAGCTCGACCTTCGCGTGCGTGTCTTTGAGTGCGCAGCCTGCGGTGTGCGGATTGATCGTGACGTGAATGCGGCACGTAATATCCGTGCGGAGGCTGTACGGATGTATGAAGCGCAACTCGCCCCCGGCACGGGGGAGAGTCTAAACGGACGCGGAGTCGCTGACTCTGATGCTGCCGGTTCGGTGGTGTTGGGGGATGTGGCGTTGGATGCGTCAAGGCCAGCCGCCACGGGCGGCGGGTCACCGTAGACGAGTAATCGTCTACTCATCCCTTTTATATATGTATACGTGTGGAAACTGAATATTTTTTAGGCTTTGCTCGGGTATCGTGCCTTGTCAGCT # Right flank : AGAGAGGTGTCGGGCTGCGTGCTCCTCATTCTGTGTGCTTGCAGAATTGAACTGGCATGTGCCTGGTTGCTAATCCTCCGATAGCTTTTGGCACCTCACCAAACCCGCCCCTCCTGCACCCGATAATGCCCCTATACTGCCCGCGATAAAAACCCCCGTTAAAAACACAGTCGGGACCGTCTCGCACGCAGGCTCGAAAAGTGCGAGAATGGAGCAGAAAAGAAAACTACGAAAGAAGATACTTTCATGCTTATTCTCGTTGTGAACGCCGGTTCTTCCTCCCTGAAGTACCAGGTGCGTGACACCTCCCTGCCCGAGGCAGAGCAGATGCTGACCTCCGGCCTCGTCGAAAACATCGGCACCGACGTGCCCAACCACGAGGTCGCATTCGACATCATGTCCGAGAAGCTTGAGCCCGTCCTGCACGGCCGCGAGCTGCAGGCAGTCGGCCACCGCGTGGTGCAGGGTGCAGAGAAGTTCACCCACCCCACCCTGCTGAC # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGTATGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 251312-248845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVYQ01000014.1 Rothia mucilaginosa strain 1211_RMUC 303_267687_4948310_107+,...,211_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 251311 36 100.0 28 .................................... AAGAACGCAGTGCGTATCAACCTCCTCC 251247 36 100.0 28 .................................... TGCAGGCTGGTCGAGAGGCTCGGCGCTA 251183 36 100.0 29 .................................... TTCCACCATTGGGCGCACCAGAACGTGTC 251118 36 100.0 28 .................................... CAAGAAAACCCGCACTGTGGTTCGTCTT 251054 36 100.0 28 .................................... CTGATCTTGAGCTTTCCAGCCGTGAAGA 250990 36 100.0 29 .................................... GTGATTTTTGTCATCGTCATCATCGATTT 250925 36 100.0 28 .................................... GAGCCCGATGTTTTGCGCGGGCGATTGT 250861 36 100.0 27 .................................... TTTATTGGCATTTCCCTACGTGAGGAA 250798 36 100.0 28 .................................... TGCCTTCGCCCAGGTCGATGATTAGGTC 250734 36 100.0 28 .................................... GCCGTGGTAACGTCCAGCCAGCCGGATT 250670 36 100.0 29 .................................... AACCGTTCAGTGACACGCACGTGCCGGAT 250605 36 100.0 28 .................................... CGTTCCTGCTTGGGTTGGCGGGCTTATG 250541 36 100.0 28 .................................... CGACGAATCACGCACACTGAACGGCGCG 250477 36 100.0 28 .................................... AGGTTCAGCAGCTTCAGCCGGGGCATAT 250413 36 100.0 28 .................................... AAGAATACCGGGGTAGAGCCATAGTAAC 250349 36 100.0 28 .................................... AAAATGGCCAGCGGGGAACCGCAGGCGT 250285 36 100.0 28 .................................... ATCGGGTCGGATTCGTAGCGGCCGGTCA 250221 36 100.0 28 .................................... CAATTGAACGTGCTAGCGAGGTTGCTAC 250157 36 100.0 28 .................................... TAAAAGCGCGCGGCGAGCTGAACCAAAT 250093 36 100.0 28 .................................... CAACAAGGATGCACACGACCTCGTTTTG 250029 36 100.0 28 .................................... GCAGGAATGTCGGGAAGGTTACGCGCGG 249965 36 100.0 28 .................................... CCAAATCGACGCGCTGCTGATAGTAGTC 249901 36 100.0 28 .................................... TGAGACGGTGCGTGTGCGTCAGACCGTC 249837 36 100.0 28 .................................... GGTTGCGCGAATGGGTGGACTGGGTAAA 249773 36 100.0 28 .................................... GAGCTTCAGCATTTGGGGTACCCGGTAG 249709 36 100.0 28 .................................... TCTTATCGCGACTGATGTTCCAGCCAGT 249645 36 100.0 28 .................................... TGCGTAACATTTTCCTTGACCTGTTTGC 249581 36 100.0 28 .................................... TAAGACGCCGCATGCTGGCATTCCTTAT 249517 36 100.0 28 .................................... GACGATAGCAATTAGTGCGCCGATGACC 249453 36 100.0 28 .................................... TCGAGGAATTCGACCTGCACGCCCCGAT 249389 36 100.0 28 .................................... TTTGTATGGTTACTGTCTAGGCCGCGTT 249325 36 100.0 28 .................................... GTTGCTCGTAGATGTCGCCTGCGTCTAC 249261 36 100.0 28 .................................... ACGAAGAGGGGCGACTGAACATGGCAGC 249197 36 100.0 28 .................................... AGTGTCAATCTCCCCCCGCTCCAAAAAA 249133 36 91.7 28 ...T..........A..G.................. CGTCGCAGAGGGCGGTGATCACGCTTTC 249069 36 91.7 29 .......G......T.G................... CAGTCATCTGTGCTGACAGGGTTATCATA 249004 36 100.0 24 .................................... GGCTCCCTCTCTCCCTCCCTCCCT 248944 36 94.4 28 ...A..........T..................... GCACTCCTTCGCACCCCGGAATCGCTTA 248880 35 77.8 0 ..T...A..-....TA................T.GT | T [248874] ========== ====== ====== ====== ==================================== ============================= ================== 39 36 98.9 28 TAAGTATATCAAGGCGAATAATGAAAGATTCTCAAC # Left flank : TGAGGATGGCTGATCCTGTGTGGTTGATGGTGATGTTTGATTTGCCGGTGAAGACGAAGAGTGAGCGGAAGTTGGCGAATCGTTATCGTCATGTTCTGCTGGATTTGGGTTTTGACCGTATGCAGTTGAGCGTGTATGCGAAGTACTATCTGAATGGGAATGCGACGGGGTCTGATTTGTTCCGGTTGCAGGTTGAGGTTCCGCCGGGTGGTGCGATTCGTATTATGCGTTTTACGGATGCTCAGTGGGCTGGTTCGATTCGCCATTTGGGGCCGGAGGTGCAGCAGATGGAAGAGAAACCGGAAGCGTTAGATATTTTCTAGCGGAGCTTCACAAAAATGAGTCGGTGGGGCAGCGACCATGTTTTGGTAGCTGTCCCACCGGCTCATTTTTCCTTTCGGATCTTGTCTAGAGATGAGCTTCGAGACAGGTATGGGGCAGTTTTTCTTGCGAAAAACTGCCCCATTTATGTCCCTGACTAGGGGAAACGCTCGATTACT # Right flank : CCTCAATGAAAGCCCCTCCGGTCTATTCATTTTAACAAATATGCGTACCGCTAGGCATAAATAACGAGAATATTAAAATAAGCCCCTCGGCCCGCAGTAGTAAACTGCAGGTCGAGGGGCCTCCTCATGCATTAGCGTTAGCTGGTAGAAAGGTCAGTGCCCGAAAACCAGGGAACCGCCCCTTACGCCACCGCCACGGTGCCCTTGGCAGCGGTGCCATTTCGGGTCCACAGCAGCAGCGCCGCCACGCTGTTGATGATGTAGAAGATGTACTTGCCGACGTTCGCGAAGTTGCCCTGAGTCAGCGCCTTCATGCATTGCACGGCGTTGTACACGAGCCAGAACTGCCACTGCATCGTGAGCTTGAGCGCGTTCAGAATGTTTGCTGACAGGGAGAGACCGAACACTGCGGTCGTGATCCAGAACAGGAACGAGGTCTGGCCGCCGTAGCCAATGTAGTTCGCAGCCAGGGAGAACGCGAACGAGCCCACTACAATGCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGTATATCAAGGCGAATAATGAAAGATTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //