Array 1 388616-390422 **** Predicted by CRISPRDetect 2.4 *** >NC_010162.1 Sorangium cellulosum So ce56, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 388616 36 100.0 36 .................................... TTGCCGCCGTAGACTCCGTTCCACGCGTCGCCGATC 388688 36 100.0 39 .................................... GTCTTGCCGAGCTTCTTGCCGATCTGCTCGATGATCGCG 388763 36 100.0 39 .................................... CGGCGCTCCGCCTCGTCGGCGCGCCGTTCGCAGTCGGCC 388838 36 100.0 35 .................................... CTCGCCCACCCCTCTGCCACCGCCCTCCCGTAGGT 388909 36 100.0 39 .................................... GGCGACGGCGCGCGGCGGGGCGACGCCTGATGCGCACCA 388984 36 100.0 37 .................................... GCTCGCTCGCCGCGTCGGGGACGATGGGCGTGGAGGT 389057 36 100.0 36 .................................... TCCAGCCACTGCGCCCTGAACTCCTCTCGCCTGCTC 389129 36 100.0 37 .................................... CTGGAACCACTCGCGCTTCATGCCGATCCGAGTGGCG 389202 36 100.0 43 .................................... CTCCGCGCTCCCGCGCGTTCGGTGCGACCGCCGCGCCCTCGAG 389281 36 100.0 38 .................................... TGGCTCGACGGGCGGTGCAGATCGCGCCCCGAGCATGT 389355 33 91.7 37 ......................---........... CACTTCGCTCCGAGCTCGGAGCGGACGCGCTTCTTCC 389425 36 100.0 35 .................................... CTGGAAGACATGGGCGAGAAGCCGCGCGGCGCGTG 389496 36 100.0 39 .................................... TTGAAGTCGCCGCCCATCGCGTCAACGACGTTGTTCAGG 389571 36 97.2 39 .......A............................ GCGCGGCCCATGGGCTCGTGCGAGCCCGAGGTGTTGCAG 389646 36 100.0 38 .................................... AGCTTCTTGTAGTTGAACTGGTTGGGATGCGCGTTGTT 389720 36 100.0 39 .................................... ACAGCGTGGCCGAGGTCGCGGGACAGCGACTCTGCGTCA 389795 36 100.0 37 .................................... AGGCCCACCGCTTCCACCATACGCAGGTGAGCGGCGG 389868 36 100.0 41 .................................... GATGGGTCGCAGTGCTCCGAGGACCTCTGCGACCTCGGGAC 389945 36 100.0 40 .................................... GAGGGCCCGGACGACGGAGATGACCGCGATGCGGCTTCGC 390021 36 100.0 36 .................................... TGCCTCATCGCGCGCGACCCGAGCGCGCCCGCGCTC 390093 36 97.2 36 ................T................... CGCGTCATGGTCCCGGAGATGGCCACGATCCTGGTC 390165 36 100.0 39 .................................... GCCACTCAGCCCCGGGGACCCTGTGGCTGTGTTCTTTGC 390240 36 97.2 40 ..............T..................... CGCCCGCTGGGCTTCGTTCTGCTGACGGCTGAGGCCTTCG 390316 36 97.2 35 ................T................... CGCGATACGCTCATCCGGAGCGCAGGCTACTCGCC 390387 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 25 36 99.2 38 CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Left flank : ACTCCAGGTCGGCCTGCGCGGGCCCCAGGTCGGCGGGCTGCATCCCCAGCGCGGAAGGCGAGCGCCCAGCGGGGGGCGAGGCCGGCGAGCCGGGGAGATGACTCGGGCGAGGTGGGGGGCGAGCCGGTGGACGCGGGGATGACGTGGCGCGAGGCGGGGGACGAGTCGGGCGAGCCGGGGGCGACGGCGCCGGAGGCGGGGCGGCGAGCGGCGGAGGTGGGGGATGGAGCGGAAGAGCTGCCGGGCGGAACGGAAGGGCTGGGCGAGCGGGGGAGTGGGTGTGGTAGAAGAGGGCGGGAGCACCGGCCGCGAGCGGTGGAGTGACGCGAAAAACCCGGGGGGCGCTCGCACGGCCGCCAGGTGTTTGAAAAGACGATGGATTTCGAGATGGTCGGGGGCCCGCGGGGGGGGTCTCCGGCAGCCGGAGCGGGGGGTGGAACGGGAACCTCTCGCAAACCGGGTTGCAAGTACGTGAAATGTCAGGTAGGCCTGGGAGGCCT # Right flank : CCTCACGAGCACCGGATACCCGGCGCGGAGCAACCCCGCCTCTCTCTGCCGCTCGGGACGTGGCTTTGCCGATATTCGTTCGAGAAATAGGGAGGTGGACAGATGGCACATGCACGGCGTGTGGCGGAGGCGCTCTCTGGCGGGCTGAACTGCGCCTCTGCGATCGTGGAAGCGCTCGATGTCGGCCCGCCGGGGGCCGATCTTCCGATGGATGAATGGGTAGGGACGCTTCGCGCGATGGAGGACGCGCTCGAAGCGATCCTGGCCAAAGAGGTGACGACGGCGCTCATCGTGCACCAAGGTGACTGTGACGTCGCCCGAAGGTTGGCCGCTCTGGTGTCGGACTGGGCGACCACGCGCCAGCCACCTCACGAGCTGCGCGCGGTGGCCGTGGCTGTTTTGCGACTCTCGAACCGTGGCGAAGCCGAACCGTGAATGTCCTGCCAGGACGACGAGGCCTTTGCCGCGCGCTGCTCCAGGGAGCGACGCGCCGGCGGGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.70,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 803514-803666 **** Predicted by CRISPRDetect 2.4 *** >NC_010162.1 Sorangium cellulosum So ce56, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================== ================== 803514 27 100.0 36 ........................... CAGCCATCGGGCGGTTCGTGGCGGCCATCGAGCCGT 803577 27 96.3 36 ..T........................ CGGCCATCGAGCCGTTCTTGGTGGCCATCGACCAGC 803640 27 96.3 0 ........................C.. | ========== ====== ====== ====== =========================== ==================================== ================== 3 27 97.5 36 TCGTGGCAGCGATCGAGCGGTTCGTGG # Left flank : GGGACGCACCTGGAGCAGCAGGCGCTCGGCGCACGCGACAACGTCGAGCACGTGGCACAGGAGAGGGTGCCAATCCGGGCTTCCCTCGCGGGCCCGGGGGGTCGGCTTTTCCCCAGAGCTGCCAGACGCGGGGGTCGAACGATGCGTGGGGGGCGTTCTCGGCAGGGGGATGAGCGCCCATCATGATGCTGTCCTTGGGATGCTTTCATCATGGATCGACAAGGCGTGCAATACGAATCAATGCGCATCTCACGCCTGTTCGACCCGTCGGGTAGCGCATCGCGGAGCCCGCCTGACATCCCGCCGCTGTCGACTGGCCTGCCACCCCCACGCGGGCGGACACCGTCGCCCTGGCGTTCGCATCCCTGCGATGCGCACGGTGGCCCCTACCAGGACTGCTCCACGCGCACGGCGCTTGGCAGCGGTCGTGCGGGAGCGGCGCCCGGAGGGGTCGAGGTGAGACGGGGCAGGGGAACGGCTCACGGCGACCATCGAGCGGC # Right flank : GGCGACGCGGCGACCGTGCGCACGTTCGTGACACTCTTCTGCGACCGAATAGCGCAGTCCGATATCCAGCCCGAGCAGGAGTTCGACGAACTCGCGCTTCAGGCATCCCGTGTAGAGGCGTTCGTCGAGCATGTGGACCATGACCGCGCCGAGTTCGCCGATGTTCGCATCGATCTCCGCGTCCGCGCTGAGTTCGTCCGCGACGAATCGCAGCCCGCTGCGCTCTGCTCGGGCTCGGCCGCGGAGCGGGGGGCCTGATGAACGGTAGCGCAAGAACACGAGCAGTGATGCGAATCACCATTGCACCCGCATCTCCGCGCGTGTATCCGGAATGACCTGGAGGATGGGGGCATGCGGCGCATGTCGAAAACGAAGGCGGCCGCTGTTCTCGTTTCCGGTCTCACGGCGTGCAACTTCGACATGGGTGAGTGCTATCTCAGGGGCCAGGGAACGGACGGCGCAGGTGGCAGTATCATCCTCCCGTCAGCGGCTACAGGAGA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGTGGCAGCGATCGAGCGGTTCGTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 7332113-7334594 **** Predicted by CRISPRDetect 2.4 *** >NC_010162.1 Sorangium cellulosum So ce56, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 7332113 36 100.0 37 .................................... TGAAGTGGCGGCCAACTGGGGAATACCTGATGTGGCT 7332186 36 100.0 40 .................................... ACCCTTCACCTGGCCGTCCACCAGGACCCAGCCCGCGGGC 7332262 36 100.0 38 .................................... ATCGCACAGAGTCCCACCGTCCCGTGATCGAATAACCG 7332336 36 100.0 39 .................................... AGGTACCTGGGCTGGGGGCGCCTGCCAGCGAGCCAGCCG 7332411 36 100.0 36 .................................... CCGTCCCAGCGCAGGTCGGCCTCGGCCACGAGGTGC 7332483 36 100.0 38 .................................... TGGCCGAGCTGCCGGAACACCTGCTCTCCCAGAGCGCG 7332557 36 100.0 52 .................................... CGCAGGACCGGCGTCGTGCACGGTAGCCTCACCGGTTCTCCGGCTAGACGAG 7332645 36 100.0 39 .................................... CGCAGGACCGGCGTCGGCGCGTCGCGTTCCGGGAAGGTG 7332720 36 100.0 38 .................................... CGCGGCAGGCGCGCGACGTGAGGTCGATCCGCGGTTGC 7332794 36 100.0 38 .................................... CGGCCTCACGTCGTCGGGAGGACATTCGTGTTCACGGC 7332868 36 100.0 36 .................................... GAGGCGTACCAGGTCGTTCTCGGAAAGCTTGTACTC 7332940 36 100.0 39 .................................... AAACAGTGCTGTCTGTGGCCGCCGAGATGCGACAGATCA 7333015 36 100.0 36 .................................... TGATATTTGACGTGCATGGTTGTGCCCCAGTAGTTA 7333087 36 100.0 39 .................................... GGGTCGTTCAGGTCACGGATCGGAATCGTCGGCATGGGG 7333162 36 100.0 37 .................................... TCCATGACCCTGCACCGCACCCGTCGCGGGCTTCTTC 7333235 36 100.0 38 .................................... GCAGGGTGGCCCACGTCGCTGGCAATCCTTCGATCCGG 7333309 36 100.0 37 .................................... CGCGAGGTCGCCCGGGGGCCGCGCGCCGCTCCTGGTC 7333382 36 100.0 39 .................................... AGCGTGTCGAGGCCCGCCGTTACTGCGGCGGCCTCCGTG 7333457 36 100.0 36 .................................... CAGTTGCAGCAGGAAGTCTACACCGTCCACGTCGGG 7333529 36 100.0 35 .................................... GTCTTGGCCTGCATCATCGCCCAGACGACATCGGC 7333600 36 100.0 39 .................................... TGATCATTCGAGTCTCGAAGCCGACCAATCTCGAACGAG 7333675 36 100.0 35 .................................... ACGTTGACGCGGAACACGCCCTGCCGCTGCGCCTG 7333746 36 100.0 40 .................................... TCCATGTGGCTGAGCTGGGCGTAGGTCTTGCCGCCGACGT 7333822 36 100.0 37 .................................... GGGTACTACTACCAGGGGCAGGACGGCGCGCCGACCG 7333895 36 100.0 41 .................................... TAGAAGTCGTAGTCGGCCCCGGGCGGCTTGATCGTCACCGC 7333972 36 100.0 37 .................................... TCTGATACCGTCAGGTTGCGTAATACCTTCTTTTGCA 7334045 36 100.0 36 .................................... ATGGGGTTGGCCTTGGCATGCTCCAGCCTGGCCTCA 7334117 36 100.0 40 .................................... GAGATCCGGGTCTGGATCTGGCCCACCACCAGGAGCCCGA 7334193 36 100.0 37 .................................... CAGTTCTGCCTCAGCTCCCGGAAGGCATCATCCACGG 7334266 36 100.0 36 .................................... CCCCGCCGTCATCAGGAAGGGAGCAGGCCCCGAGGG 7334338 36 100.0 39 .................................... ACGAGCTTCGCGCGGAGCGCCGCAAGCTCTCCCTCCGCC 7334413 36 100.0 37 .................................... AACGTGGATCGGTCCAGGTGCGCGGGGACTTCTCGGT 7334486 36 100.0 37 .................................... AACGTGGATCGGTCCAGGTGCGCGGGGACTTCTCGGT 7334559 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 34 36 100.0 38 CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Left flank : TCCCCCGCAGAAAGCGCGGGCGCCCCGAGGCGGCAGACGGGCGCCCCGCGGCGGAAGGCGTCTCCCCCGGGTCCGAGGGCAAGCACCCCGCAGGGGATGAGTCGGGCGAGGCGGGGGATGAGTCCGGCGAGGCGGGGGGCGACGTGGCCGGAGGTGGGGCATGCGTCGTCCGAGCCGGGGGCGACAGCGCCGGAGGCAGGGCAGCGAGCGGCGGAGGTGGGGGGTGTACGGGCGGAGCCGTCGGCGAGAGCGGAAGGGCTGCCCGAGGAGAGGACGGGGTGTGTTATGACGAGGGCGGGAGCACCGGCTGCGAGCGGTGGTGTGACGCGAAAACCCCGGGGGGCGCTCGCAAGGCGGGCAGGTGTTTGAAATCAGGAAGAATTTTTGGATGGCCGAGGCCACGCCAGGGGCCTCGGACGACCCGCGCGGGGGGCCGAAACGGGAACCTCTCGCAAACCGGGTTGTAAGTACGCGAAATGTCAGGTAGGTCTGGGAGGCCT # Right flank : CGTCAAGCCCCGGCGGTCGAATTAGAGCGCCTAACAAAAGCTAGTCTGGACGTAACTGAGGCAGATCAGGCAGACGGAGAGCTTGAGGAACCCACGGTGAATGTCGGCCCGCCGCTCGTAGCGTACGGTCAGGCGCCGGAAGCGACGCAGCCATGCGATCGTCCGTTCGACGACCCATCGATAACGGCCGAGCTTCTCCGACGACTCGATACCCTTGCGAGCGATGCGGGGTACGATGTGACGCAGATGGCAAGCCAAGCGCAGGGCCGGGTCGTCGTATGCCTTGTCCGCGTGCAGCTTCTTGGGGCGGCGCCGCGGTCGGCCGCAAGGACGCGCGATCGGCGGCACCGCATCCACCATGGGGGTGAACATCTTCGAGTCATGGACGTTGGCCGGCGTCATCTCGACGGCGAGCGGGATGCCACTCTGATCGACCAGGAGGTGATATTTCGAGCCCGCCCGGCCGCGATCCGTGGGGTTCGGGCCGGTCTCTTGGCCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.70,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 4 7335521-7337235 **** Predicted by CRISPRDetect 2.4 *** >NC_010162.1 Sorangium cellulosum So ce56, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 7335521 36 100.0 36 .................................... CCGCGAACCTGCTGAAGGCGCTGCTGAAGGAGAGCG 7335593 36 97.2 36 ..................................T. CTGATCGCGGCCTCGCCCACGTCGCGCGCGAGCAGC 7335665 36 100.0 40 .................................... GACCCGACGACGCTCCCGGGGAAAATCGGCTCGCCCTACT 7335741 36 97.2 38 ...A................................ AGCGTGTTCTCTAGGTATTTCTGCATCCAGCCCCTCTC 7335815 36 100.0 38 .................................... TTGCAACCTGTCCACGAAGCCTTCCTTGAGCTGCGTTG 7335889 36 100.0 39 .................................... TCGAGAGCCGCCCTGTTCTCGGCGATCTGCTCCTTCTCT 7335964 36 100.0 40 .................................... ATCCCGCGGTGGCGTTGCGAGAGCGCGATGTTCAGCGCGT 7336040 36 100.0 36 .................................... ATGGCCTGCCAGGCGTAGATGGCCTGCTCCGCGGTG 7336112 36 100.0 38 .................................... AAGGGTAGGACGTCGCACGTTGCATGCTGTTGTCCCGC 7336186 36 100.0 36 .................................... GAGATGTGCGATGAAGCCGAACGTTTGGGAATTCCT 7336258 36 100.0 37 .................................... TGAGATGAGCGTTACGGCCTCGGGCGCGCGACGGGTG 7336331 36 100.0 37 .................................... ACGGCTGGAAGGAACGCCTGGGCAAGTTTGCCGATTC 7336404 36 100.0 37 .................................... ACCTCGGCGAGGTTCCGCGCCGGCCGCCGCTCTTCGA 7336477 36 100.0 36 .................................... GACACGTTCGAGCGCATGACGTAGAAGTCAACGAAC 7336549 36 100.0 36 .................................... TCCTCGACCACGCCGTAGGGGATGCGCGCCTCGGCG 7336621 36 100.0 37 .................................... GAAAGCGTCGTGTGCATGGCGGCGAAGAGGGCGTCCG 7336694 36 100.0 35 .................................... ATCGCGGTGTTCGCGGTGGAGGGCTCCCAGCCTTG 7336765 36 100.0 36 .................................... AGAACCGGAGCGGGCGAAGCCCTACTCCTTGATCAT 7336837 36 100.0 35 .................................... CAGTGGGCGACGTACGAGGCCGCGCGGAAGCTCGG 7336908 36 100.0 38 .................................... CGACAAGATGCTCAACTGATTGTGAATCATCTGCTGCA 7336982 36 100.0 36 .................................... AGGATGAAGGTCTCCTTACGGCTCCGGACCTTCTGG 7337054 36 100.0 38 .................................... ATCGCGGTGCTGCCGTTGTAGATCGTGATCGCGAGCGG 7337128 36 97.2 36 ........T........................... CCCATATAGAAGTCGACCGGCTCAGCCTGGACCCGC 7337200 36 94.4 0 ........T.......C................... | ========== ====== ====== ====== ==================================== ======================================== ================== 24 36 99.4 37 CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Left flank : TGATCGACCAGGAGGTGATATTTCGAGCCCGCCCGGCCGCGATCCGTGGGGTTCGGGCCGGTCTCTTGGCCCCCCTTTTTGCCGGAACCAGGGAGGCATCCAGCGCAGCACGATTCCAGTTGATTTTATCGGCCCCGCCGAGTTCATCAAGCAATGCCTCGTGAAGCCGATCCCACACGCCAGCCTGCTGCCAATCGCGCAATCTGCGCCAGCACGTCATTCCGCTGCAGCCGAGCTCTTGCGGTAGATATTCCCAAGGGATCCCTGTCCTGAGCACAAACAAGATCCCCGTCAGGGCGGTCCGATCAGGCGTACGCGGCCGGCCGCCCTGCGGCTTCGGCTCCGTTTTCGGCAATAGAGGTTCGATTCGCTCCCAGAGTTCGTCCGGCACCAACAGCTTGCCCACGCTGTATTCTGCCGCACGTTCCGCATCCCTCAAGCGAGCGGGCAAACGAGCGGCGTCAACGGAGTAATGTTAGGTGCTCTTACGCGACGTGTTC # Right flank : CAAATCCTGCCCCCGGAGTGAGGTTGGGGGGCAGGGGGCCAAGTCCACCGGCTACGTCGACGGGCGTCTGCATCGATGTGAACGGGGCGCGGTCCCAGGGACCGCACCTGCCGCGCAACACCACGAAAGCGCACAGACTTGCGTCGTCGCCAGGGTTCTACTCCCATTACGGATTTCCTACGTCAAGATGTTACGCTGAAGAGACGAGAAGAATGGCGTCGATCCGCCTGGCAGGCTCGTCCTTGACGTGGCCAGGGGCCGCGCTCCACGTGCTCCTCGGGGGGAGCACATGAGGCGGCTGCTGCGCGTGCTGGGTCTGCTGGGAATTGCGGGGACGGCGGCGACGACGGGATGTGGAGCATCGCCAGAGGTGGACGAACCTGAAGCGGCCAGCGGCGAGGTCGAACGGCCTGACTCCTACAGTGAGTGCGTTGCCGCCTGTAGGAACGGTCAGCTCGCGATGGAGCAGTTTTGCCGGGGGCTACCTGATCCACGCATGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCGCCGCTGAAAGGCGGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.70,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 5 8022791-8022139 **** Predicted by CRISPRDetect 2.4 *** >NC_010162.1 Sorangium cellulosum So ce56, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 8022790 37 100.0 41 ..................................... GAGTTGCTACTGGGCCTCAACCACTTGAGAAAAAGTGAGAG 8022712 37 100.0 40 ..................................... AGGATCGCCGGGAGTGGGGTTGGGGCAGCTGAGAATGATT 8022635 37 100.0 40 ..................................... ACGAAGCCGTACGCGGCAAAGGACGCTTCCACGATCCGAT 8022558 37 100.0 41 ..................................... ACCGTCGCCATCAGAGTCGCGCTCGCCATCCAGGATGCAGA 8022480 37 97.3 38 .....G............................... CTCGAGCTCGCCATAGTGATCAGAACAAGACCCGACGC 8022405 37 97.3 40 .......................G............. AATTTCAACAAGCTCGACTGGATCAGTAACTGACTTGAGC 8022328 37 97.3 41 ..........G.......................... GGTTTGAAACGCTTGCCCCTGTCCCTTGAGATTGGGAAGGG 8022250 37 100.0 38 ..................................... GGGCAATAGTCTGCGCAGGCCATGAAGGCCTTGAAGTT 8022175 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 99.1 40 CCCGAACGGGACATGCCTGCTCAAAGGGCATTGAAAC # Left flank : TGCTGTCACGCGCGCCGTACGTAATGCTGAAGGTCGCCGCCGGGAGAGGGGAGGTCGGGGAGGCGATGCGATGTAAGGCGTTCTCCAGCAGGGAGCAGCTCAGCGGGATGGCGGTCGAGCGCCATCGAGCGGATGCCAGGGTGTCGGGTGGTCCGCCGAGCGGGCGGGCGTGGCGGATGATGACGACGGGACGATGACGGACGAGCGTGACAGCGGGGGTCTTGACGGGCGAGCGTTCTCCGGCGACACTGGCGGGGCACCCGCGGGAGCTGCTCTTTGACAAGGTGAGAAGGCAGACCCTGGCTGCCGGCGCTAACCGCGAAGGAGGCAGCTGGGGGTGGGGGGCTAGCGGATCGTGTAAGTAGTTGAATGTGTTGTAGAAATCGGGGAGTCGCCCGGCGTGGGCGGTGGGAAGTGAAGCAGGCGAGCGCGTCGCGTGGGAGGGGTTAGCGGAAAACTGTGTCTAAGTTGTCGGAATCGTTGTGGATCTTGAGGTGACT # Right flank : AAGAAGGCCTTTGCCGCGCGCCGGTTCGAGGGGCGAGGCGCTGGCAGCGGGCTGCGCCGCGCGGCAAAGGCCGGTTGAACGAGCCCCTGGTGGCGGGGCGTGGCTATGCAGAAGTTGACGTCGCGGCGGGCGTTCGCGACGTGCACGAGGAGTGCTTGAGCTCCGTTCGCGGGCCACGCCGGGCGCCGAGCACCTGCTCTGGGGGCTCGCATCGTGGTCGGAGCGGCCGCTGCGCCTGCTCGCGATCGGACAGATCGCCACGCCCGGCACACTGCTGCACGGTGGCGTCGATCGCGTCACCAGGTACGTCGGCGAGCTTCGGGTCGCGTCGCGTCATGAGGTGTCGTGCGGCGGGGGTGGCCGCCTGCCGTCCGGCAGCGGGCGGCGTACGATGGCGCCTCCGCAGACAGGGCAGCGGAGCGCGTCGATGCCGGCAATCGCGAGCAGCGCGTCGATCCATGTCATCACCGTTGCGCGCAGGCGCAGGTGCGGGCATGGGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGAACGGGACATGCCTGCTCAAAGGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 6 12787348-12793800 **** Predicted by CRISPRDetect 2.4 *** >NC_010162.1 Sorangium cellulosum So ce56, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 12787348 36 100.0 34 .................................... CCGTGGTACGCGCCCCAGGGCACCTGGCATGCGG 12787418 36 100.0 37 .................................... ATCGGCTGCGGCTCGGGCTCCGGGGGCTCGGGAGGCG 12787491 36 100.0 34 .................................... ACGTCGATGAACTCCCCCGCCGACACGACCCCTT 12787561 36 100.0 37 .................................... CTGCTCCTCTCCCGCACCATCGCGGACGTCTGCCCCT 12787634 36 100.0 35 .................................... GGCTTGGCGGCGGTCTCGCTGTTGGGTGTCGGGGT 12787705 36 100.0 36 .................................... CGGCCATCGGCACCGACGAGGAGTCGGACCCGGCCC 12787777 36 100.0 37 .................................... AGCTCAGGCGTGTCGCCGGTGGCGCCGCTGGTCACGT 12787850 36 100.0 36 .................................... CCTCAGGCCTCGGTGAGGCGGACGAGCGCAACCCCG 12787922 36 100.0 37 .................................... TTGCCGGCGCCCCGGTCGCCGAACTCGAAGCCCAGCA 12787995 36 100.0 35 .................................... CAGGACTTCGTCAACGCGTGCCACGAGCAGCTCGA 12788066 36 100.0 34 .................................... AGCTGTTGCCGGTCGCGCTCGGCATCCGCGTCTG 12788136 36 100.0 34 .................................... GAAAGGACGTTGTCGAGCATGTAGCCTCCGGGAG 12788206 36 100.0 35 .................................... CCAGCGTCAGGGCTCGCCACGGGGCACGCTTCCAA 12788277 36 100.0 36 .................................... GTGACCGAGGCGTCCGACCCGCCGCCCCTCGGCCAC 12788349 36 100.0 36 .................................... AGCCCGAGGCGCTCTGCGAGCGTGGCGCGCATCATC 12788421 36 100.0 35 .................................... GTCTCGACGCGCCAGCCGATGCCGCGGAGCCCGAC 12788492 36 100.0 33 .................................... TCGGTCACGCCGGCTACATGGCGCCGGCCAGGG 12788561 36 100.0 37 .................................... CCGGAGAACCGGTGAGGCTACCGTGCACCAAGCGATG 12788634 36 100.0 37 .................................... TTGCCGGTCGCGTCGATGCTCGCGACCTTCTTGGGAA 12788707 36 100.0 35 .................................... CCACGCGAGCACTCGGCGAGATACGAGCCCTGCGA 12788778 36 100.0 33 .................................... ATGCTCCTTCCGCACCACGTCCGGCCCTTCCGA 12788847 36 100.0 38 .................................... TGGGTCCAGTGCGGCGGGAACATGGCCAAGGTCGCCAG 12788921 36 100.0 35 .................................... TACGCGACGCCGAGACGCTCGGGCGGCCCGTGCTT 12788992 36 100.0 34 .................................... ATGCAGCTCGCGAAGGCACGGTTCGACCCGGGCG 12789062 36 100.0 36 .................................... GTCGCGAGGGCCGTGAGGCGGTCCAGCGCGTCGGCC 12789134 36 100.0 34 .................................... TTGCCCAGCGTGAGACCGCCGCCGCGCGTGGCGA 12789204 36 100.0 35 .................................... ATGATGCCTCGCGAGTTCGCGGAGAAGATGCACGA 12789275 36 100.0 35 .................................... AACGCGCTCACGACGCTGATGAGCCGGTTCAGCGG 12789346 36 100.0 36 .................................... AAGCGAGAGTCGTTGCGCGAGCTGCGTCGAAAGGTC 12789418 36 100.0 38 .................................... CTCGAAACCGTGTTCGGTGACCTCGAGCGCCGCGGGTT 12789492 36 100.0 37 .................................... AACCCCTGATCCGTTTTGATTCCTTCATCGAAATCGA 12789565 36 100.0 35 .................................... CGGACGGGAGCGGTTACCGGTGGTGTTATAAGCGT 12789636 36 100.0 33 .................................... CGAGAGCGATGGGGCGTCTCTGTGGTCTTTTGA 12789705 36 100.0 37 .................................... ACTTCCAGTTGGATCTTATTTGATCCACTTAGTGAGT 12789778 36 100.0 38 .................................... AAGCGGAACACGCCGCGAAGGAACAGATCGGGGAAGGT 12789852 36 100.0 34 .................................... CTGTACGAGTTCCTGAACGGCACCCGGGGTCTGG 12789922 36 100.0 34 .................................... CCTACGCCGCTCGACGACCTCCTGACCGACCTCA 12789992 36 100.0 34 .................................... TCTCGCTCGAGCTCATCTACGGGCTCGGCGCGCT 12790062 36 100.0 36 .................................... CTTGAGTACATCATCGCGGCCGTAACCGTCATCTTC 12790134 36 100.0 35 .................................... ACGCTTCGGCATGAGTATGACGGCGTGCCGATCGG 12790205 36 100.0 36 .................................... AGCCCGGCCGACATGACACCCATCGACTGGGGTGCG 12790277 36 100.0 34 .................................... CGGAATAGCTACCGAGAGAACCGCCCGGACTGGG 12790347 36 100.0 35 .................................... ATGTTGGCTAGTGGATACGTCGTCCCGTTGAGCAC 12790418 36 100.0 34 .................................... GTGACCGAGGTGCTCGTGGACCAGGCGCTCGTGC 12790488 36 100.0 37 .................................... TGCCAGAGGGCGTCGGCGGTCAGCGGGGCCTTGATGG 12790561 36 100.0 34 .................................... AGGCGGGGGACGATCACGCCGCTGACGCGTTCCT 12790631 36 100.0 35 .................................... CTGACCCGCACCGGCGGCGTCGGCACCTACACCGA 12790702 36 97.2 34 ....G............................... CCATGGATTGGGAGCTTCACGACGGCGAAAAGCT 12790772 36 100.0 39 .................................... CTCTTCCACGAGCCCACCGGCCACAGCGGGCTCGGTCGT 12790847 36 100.0 37 .................................... TGTGCGGCGAAGCCTCGGCCGATCGTCGCGGTCTCCC 12790920 36 100.0 34 .................................... GCGTCCACCGCGGCGAGGTGACGAACGGACCCGG 12790990 36 100.0 35 .................................... TGGAGTCTGGCCATGGGCCTCGTCAGGGTGATCGT 12791061 36 100.0 36 .................................... AATCGTGATTTTTTAATCGCTCATGTCTGCAAGCTG 12791133 36 100.0 33 .................................... AACGAACATGTCGTAGTATCTCCAGCGTTCCGC 12791202 36 100.0 35 .................................... GGCCAGTGCTCGCGGTCGACGCGCGCGCGATCCCA 12791273 36 100.0 35 .................................... ACGTTGGTGGTCTCGCATCAGATCTCGGTGGACGG 12791344 36 100.0 34 .................................... TCGTGGTCGACGCTGGCGCGAAGGCCCGGTGCGC 12791414 36 100.0 35 .................................... AACTCCGCGGCGACCTGCTCGTCGGTCAGGCCGGC 12791485 36 100.0 35 .................................... TCGCGCAGCACCCCGGCGGGCTTCTCGCCATTCCT 12791556 36 100.0 35 .................................... AGGTCCGGCGGGACGGCGAACATCGAGAGGCCGTC 12791627 36 100.0 35 .................................... ATGCCCTTCACGGAGAGCTGGATCGCGCGGTCGCG 12791698 36 100.0 35 .................................... CCGCACCTCGACGATCAACTGCGCAGCGCGCTGCC 12791769 36 100.0 35 .................................... ATTGCGCCGCCGTTGACGATCGTAAACGCGTACAT 12791840 36 100.0 35 .................................... CTGGAAACCCGGTTCGGCCAAGACTGGCAAGGGTG 12791911 36 100.0 35 .................................... ACGTCTGGCCACGTCTTCTACGAGCCGTCCACGCG 12791982 36 100.0 34 .................................... TGGGCCATCGGCGCGTGGGACGTCCCAGCCCTCT 12792052 36 100.0 34 .................................... TACAACTTCCATCCACCAAGCTCTTCTACCAACT 12792122 36 100.0 35 .................................... TAACTGATGAAGATGTAGATCGATTTCTGCCACCA 12792193 36 100.0 35 .................................... ACCTCGAAGGTGCCCTGAAGCTCGTTGACCTCGAG 12792264 36 100.0 36 .................................... TACGAGTAGCTGAGCGCGAGGAAGGCGACGGCTTGT 12792336 36 100.0 37 .................................... CGATAGAGATACTCCGGCATCGCCAGACGCTCCATGC 12792409 36 97.2 35 ..........................T......... ACCCCCACGGCGCCGAAAGTAAGCAGAGCTGCGCA 12792480 36 100.0 35 .................................... CTATGCGGCAGACATGGTGCTTGTCCACACACCAT 12792551 36 100.0 33 .................................... ACAGCGGCGAACTCACGGCGAGCTTTATCACGC 12792620 36 100.0 35 .................................... CCGCTCGGGATCATCATCCCCGAGCGTCACCAGCG 12792691 36 100.0 35 .................................... CTCTGCAGGAGCTCGCAGTAGCCCGTCCGCTCCTC 12792762 36 100.0 38 .................................... TGGCCGAGAACGAGCCGGTCCGGCTGTCGACGCTGGAC 12792836 36 97.2 36 ........................A........... CGCGCCGCCGAGTCGCTGCGGGCGAAGGAAGCGGAG 12792908 36 100.0 36 .................................... GTGGGTCGGCGGCGGGATCCACTCCTGCAGTGCAGG 12792980 36 100.0 36 .................................... ATGACGCGCGAGAACACGGAGATCGATGTCGCCGGA 12793052 36 100.0 36 .................................... CTTCACCACCGATACGAAGCGATCCGCGTCGCCCTG 12793124 36 100.0 35 .................................... ACCGAGGAGGAGGCCGCGCAGATCGCGCCGCACCT 12793195 36 100.0 36 .................................... TGGAAGTAGTGCTGTCCTCGTCCTGGCGTCGAAAAA 12793267 36 100.0 37 .................................... CCCGCGTGCAGCGGCACGGAGGTGCGCTCCGCGTCGA 12793340 36 100.0 35 .................................... ATCCCTCGGCGCACGAGCCCGCGCACGCTCGCCAC 12793411 36 100.0 35 .................................... ATCCTCGGCGGTACCGACGATGACGGGATCATCGC 12793482 36 100.0 34 .................................... CAGTGAACCCGGAGGGCAACGATCCCTCAACCTG 12793552 36 100.0 35 .................................... ATGCTGGACCCGGGGCGCGATCCCATGAGCGGCGA 12793623 36 97.2 35 ..........................T......... ATCACGTACCGAGTCGACCCAGAGGGGAGCTTGCG 12793694 36 100.0 35 .................................... TGCGTGCCGAGGCCCGCGCGCGCATCGAGGCCGAG 12793765 36 94.4 0 ...C.............................T.. | ========== ====== ====== ====== ==================================== ======================================= ================== 91 36 99.8 35 GCGATCCCCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : GAACCCAAGGCGCTGCGCAAGGTGCACAAGGTGCTGAGCGCCTGGGGCAAGCCCGTTCAGTACTCGGTCTTCCGCGTGCGCGGGACAGCGCGCGAGCTGGCGCGCCTGCGCTTCGAGCTGACCGGGCTCATCGCGCCGACGGACCGCCTGATGGTCATCCGACTCTGCCCGGACTGCGCCACCAGGGTCACCGTTCAGGGCAACGATCTGACGCCGCTCGATCTGGAGCCTCCGCCGTTCCGGATCGTGTGAGGCGGAGGATCAAGCACCGGCGCGCGATTCCGCGCGCGCCCTGATCCTTGACATTCGAACCCAGTGATTACGATAATTTACGTCGTGCTGAGGGCTGGGCGGGTGCGTGAATGGCCGCCGACGCGGGGGAAGGTGCTGCTGGACGAGGGGCGCGCACGGGAGCGGGGCGCGCGTGGCGGTCTGGGAAGGGAGGAGCTTGCTGGAGTGGAAAAATTGGTGAATGATATCAATTGCTTGTGGTGGGCGGG # Right flank : CTGGTGGAGTACCCCGACGGGAACGACTTCTACCGCGCTCCCGCCGTGATGCCGTTGAGCCCCCCAAGCTCGTCGGCGACCTTCACGCTGTCGTCGCGGTGATCCTGTCGATGCTCCTCGGAAACCGCGTGAAGTTGGACGGGCCGGTCCACCTGGCTCCCCGGACCCGAGGCGGCGCGAGCCGGCGGGACCTCGCTGGTCCCGGGGGCGTAGGCCAGCGCTTCGACCGCCGAGAAGCGGCCCTCCGCCGCCGTCGTCGCCGACGATCTCCCTGCCGGCAGCCCAAAGAGCGAAGGGCCGGAGCAGCACCTCCGAGCCTTCAGGTCGTTCACCGGGACGCGCGCCGACAGGCGGGGTCGCTCGTCGGCCCAGTGGAGGTCCACTTTTCGGCGACCGCCCGCGCCGGGACATGGGCGCCGTTCGCTTCGTCATCCGCGCGGGAACGGCCCCGGCCGACGCTCGGCCGTGGAGCCCCGTGCCCTGCCCTGACGCCGGGGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGATCCCCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //