Array 1 947970-949462 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063294.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R17.1451 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 947970 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 948031 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 948092 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 948153 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 948214 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 948275 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 948336 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 948397 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 948458 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 948519 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948580 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 948641 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 948702 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948763 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948824 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 948885 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 948947 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 949008 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 949069 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 949130 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 949191 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 949252 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 949313 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949374 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 949435 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965595-966295 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063294.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R17.1451 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 965595 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 965656 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965717 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 965778 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 965839 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 965900 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 965961 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 966022 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 966083 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 966144 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 966205 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 966266 29 96.6 0 A............................ | A [966292] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //