Array 1 3472318-3473966 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054591.1 Pseudomonas aeruginosa strain CDN118 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3472318 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 3472378 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 3472438 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 3472498 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 3472558 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 3472618 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 3472678 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 3472738 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 3472798 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 3472858 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 3472918 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 3472978 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 3473038 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 3473098 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 3473158 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 3473218 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 3473278 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 3473338 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 3473399 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 3473459 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 3473519 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 3473579 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 3473639 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 3473699 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 3473759 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 3473819 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 3473879 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 3473939 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3483897-3482492 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054591.1 Pseudomonas aeruginosa strain CDN118 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3483896 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 3483836 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 3483776 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 3483716 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 3483656 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 3483596 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 3483536 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 3483476 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 3483416 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 3483355 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 3483295 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 3483235 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 3483175 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 3483115 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 3483055 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 3482995 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 3482939 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 3482879 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 3482819 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 3482759 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 3482699 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 3482639 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 3482579 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 3482519 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4999966-4999038 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054591.1 Pseudomonas aeruginosa strain CDN118 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4999965 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 4999905 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 4999845 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 4999785 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 4999725 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 4999665 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 4999605 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 4999545 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 4999485 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 4999425 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 4999365 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 4999305 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 4999245 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 4999185 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 4999125 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 4999065 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //