Array 1 63346-62464 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUD01000002.1 Escherichia coli strain K30 IMT32646_S7_L001_R1_001_contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63345 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 63284 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 63223 29 96.6 32 ..A.......................... CCGCCGTCGAGTGTAATACCCTGATCCATCGC 63162 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 63101 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 63040 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 62979 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 62918 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 62857 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 62796 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 62736 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 62675 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 62614 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 62553 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 62492 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAGATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82795-81424 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUD01000002.1 Escherichia coli strain K30 IMT32646_S7_L001_R1_001_contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82794 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 82733 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 82672 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 82611 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 82550 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 82489 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 82428 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 82367 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 82306 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 82245 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 82184 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 82123 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 82062 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 82001 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 81940 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 81879 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 81818 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 81757 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 81696 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 81635 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 81574 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 81513 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 81452 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //