Array 1 45524-44499 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ALQL01000036.1 Streptococcus agalactiae CCUG 24810 ctg120000888424, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     45523	    36	 100.0	    30	....................................	TTTGGTAACCATTTTTATGAAATTTTTTAA	
     45457	    36	 100.0	    30	....................................	TAAACGTGAGAGTGAAGAAATCAAAGCTTG	
     45391	    36	 100.0	    30	....................................	TTGTTAGCATAGACATCTTTTTTGGCTTTG	
     45325	    36	 100.0	    30	....................................	AAGTGTGTTATCATATCTTCCTTTGGTTTT	
     45259	    36	 100.0	    30	....................................	AATAGGCTTAGGCGCATCTGGTTCTTTACT	
     45193	    36	 100.0	    30	....................................	ACTATAAGTATTTTGTTTTATCCCTAGTAG	
     45127	    36	 100.0	    30	....................................	TATCTACGAGACGAAAACAATTGCCAATGT	
     45061	    36	 100.0	    30	....................................	AGTTATCAATGCTATATGGTTTCTCATCTT	
     44995	    36	 100.0	    30	....................................	GTTTAATTTTGAATAATATCATGTTTACTC	
     44929	    36	 100.0	    30	....................................	TATGTCATTGTGATTGTGGGAATACTTGTG	
     44863	    36	 100.0	    30	....................................	GGCGAACTTGTAACGTTTGACGGTAATTTT	
     44797	    36	 100.0	    30	....................................	TAATGTCTTTTCCTAGAATGTACATTTCTA	
     44731	    36	 100.0	    30	....................................	AAGCTAATTCTCATCTCACCGAGATGGATA	
     44665	    36	 100.0	    29	....................................	TTTTACCAATGCTTCCATATCGCTTATAT 	
     44600	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT	
     44534	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGCCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//