Array 1 196755-194894 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJN01000004.1 Salmonella enterica strain BCW_5827 NODE_4_length_275906_cov_3.84328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196754 29 96.6 32 ............................T GATTAGGTCAGGAGTTGGTGACGCGTGGAGGG 196693 29 100.0 32 ............................. TCGGTTCAGAGGTGATGCTGTCGTCGCCGTCA 196632 29 100.0 32 ............................. GCTACGCGGAAATGCAATCCGCAATACTGGAG 196571 29 100.0 32 ............................. GTCGTTGCCAACCGCCCCGGGCAGAAGGGAGC 196510 29 100.0 32 ............................. ATACCGCCACGCCCGAGGACGCCCGGGAGGAA 196449 29 100.0 32 ............................. TTGTATTTGCTCATCGCACAGGTAAAGGTTCT 196388 29 100.0 32 ............................. AGGCGTGCATCAATTGCTACGAGGCCGTAGTC 196327 29 100.0 32 ............................. ACCTGTTAAAACTCGTTGATATCAGAGGAAAT 196266 29 100.0 32 ............................. AGCATCCTGATTACGACGGCAGAACAGGTAAA 196205 29 100.0 32 ............................. GTGCTGGTACCACCGGCTGAACCACCAATCCC 196144 29 100.0 32 ............................. TAATTTCATCTCTCGCGGCCTGATTTTGTTTC 196083 29 100.0 32 ............................. ATGGAGTATTTTGTTCTGACATATCGCCCCCT 196022 29 100.0 32 ............................. CCTCTGATTCTAGGGGGTACGAATATCACATA 195961 29 100.0 32 ............................. TTGTCCATGCTATCGGCAATTTTCATCAGGCC 195900 29 100.0 32 ............................. GATTTAGAGTTTCCCATGCCGTATCCGGACTG 195839 29 100.0 32 ............................. AGAGCTGTGACACTGTTTTACGGGTTGACTAT 195778 29 100.0 32 ............................. ACGCGCCAGCGGGCGTGGACTCCTGCGCGTGC 195717 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTTCACGTA 195656 29 100.0 32 ............................. TAGTCCCTACACTGGATAAATCAGGATGTGAC 195595 29 100.0 32 ............................. CAAAATGACTTGATCAAGAAAGCCCAGCAAGA 195534 29 100.0 32 ............................. CTCTCCTGCACTGTAGTTGTTTCTTCGATGGC 195473 29 100.0 32 ............................. TAATGATCTTGGACTACGGAAAGGGCAAGGGG 195412 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 195350 29 100.0 32 ............................. TGAAATCCATCCGCTACGAACCTGAAGAAAAA 195289 29 100.0 32 ............................. CCGAGTTCGCGCAGTGTTTCTGTGCAGGTATT 195228 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 195167 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 195106 29 100.0 32 ............................. GTGATTCGCCAGTTCGCCCGAACGGTGATCGC 195045 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 194984 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 194923 29 96.6 0 A............................ | A [194896] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCGGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 214196-212887 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYJN01000004.1 Salmonella enterica strain BCW_5827 NODE_4_length_275906_cov_3.84328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 214195 29 100.0 32 ............................. TATTGGAAGCGTTTGAACAGGCTATGAACTGC 214134 29 100.0 32 ............................. TTTAATGTAATACATGGTATTTCTTTTTAGTA 214073 29 100.0 32 ............................. GTGGCGATCTGGTCAAGCAACTGCTCACGGGT 214012 29 100.0 32 ............................. GCACCGACGACGATGATCAGTTAACCGGTGTT 213951 29 100.0 32 ............................. GGGGCGCGGGTTTACGGTTTTAGCGAAACGCC 213890 29 100.0 32 ............................. GCGCGCAGATTCTCGGCGGCTGGGAAAACACG 213829 29 100.0 32 ............................. CCAAAAACATGTACGTTCATAATTTAGTCCTT 213768 29 100.0 32 ............................. CGACGATCGCGGGCAATTAACGATCAAATACG 213707 29 100.0 32 ............................. CTTGTCCGAATTGTGGAACTGGTTCGTGAAAT 213646 29 100.0 32 ............................. TTTCCGCTCGCGCTCGTCCATCATTCCGCGCC 213585 29 100.0 32 ............................. ACCGCCACTGAGGTAAACGTGCGAGTCGGTCT 213524 29 100.0 32 ............................. CTTTTGTTGCTTTTCATGTTTCAGACTCGTAG 213463 29 100.0 32 ............................. GCTGACTGCGGAGCTGGAATCCAGAGGGTTAT 213402 29 100.0 32 ............................. CCGCGTACCGGGTTGGAAATACCGGAGTTATT 213341 29 100.0 32 ............................. GCGTATGAAATCGACTACAGCAGGCGCAAACA 213280 29 100.0 32 ............................. CACGTCAAAATATTAGTCCACTACTGGCAAAG 213219 29 100.0 32 ............................. TCATTACCTGCGGCGTTCTTGTCGCAGCTGCC 213158 29 100.0 32 ............................. ACGCCGACACGTACACAGCTTAATACGCTGAC 213097 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCGG 213036 29 100.0 32 ............................. CTGGTGCCGCGCCAAGATTCACCGCGTTTACC 212975 29 100.0 32 ............................. CACGAGTGGCAAATTGATTTCGACGAAAAACC 212914 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //