Array 1 1340337-1345104 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084172.1 Acidithiobacillus ferrooxidans strain YQ-N3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1340337 28 100.0 32 ............................ CATTCCCGCGTAGAGAGTGCCCCTTGCGGGGC 1340397 28 100.0 32 ............................ GTGATAGACTACGGCGATGAGATAGACACCCA 1340457 28 100.0 32 ............................ ATTGGGGCCAGTCTCCGTCAATTGCCGGTAAG 1340517 28 100.0 32 ............................ AATATACTGGCAGCGCAGGGCTTTGTCGAATC 1340577 28 100.0 32 ............................ CTGATTAAGAATCTGCGCGGTATTGCTCTTAT 1340637 28 100.0 32 ............................ ATAGGCTGCGTAGGGGAAAGCGAGTTGTTAAT 1340697 28 100.0 32 ............................ TCGAGCACCACTCCCGGCATGTCCTCCGCACA 1340757 28 100.0 32 ............................ TGAATATGCCGCCAAGTAACTATATCCGAACC 1340817 28 100.0 32 ............................ AGCAGCAGCAGCGCCTCAAGCATAGCGGCGCT 1340877 28 100.0 32 ............................ ATTGGACGCTCTCATGGCGGGGCGCAATTCAA 1340937 28 100.0 32 ............................ AAATTCTTGATTTTCTAGACATAGACCATCAA 1340997 28 100.0 32 ............................ TTCCAGACGTTCGGAGTGACTAAAGAGCAGAT 1341057 28 100.0 32 ............................ AGCATTGATCGGCGACATCCTGACTGAGTGGA 1341117 28 100.0 32 ............................ GATTGGGATGTGGTCAAGATAGAGGCCAGCCT 1341177 28 100.0 32 ............................ TGACTCGCAAAAAGATACCAGCACCGGAAGGC 1341237 28 100.0 32 ............................ GCAACGCCGCCTGCGCTGTCGCTTTTCCATCT 1341297 28 100.0 32 ............................ GACATTTCCGGGCCCAGCATCCGGCTGGCAGA 1341357 28 100.0 32 ............................ GACTCGTCATCGGTGCGCTGCAATCCAATCCA 1341417 28 100.0 32 ............................ CTGTCGCCCAATGCTCGGCATCACTGGACAAA 1341477 28 100.0 32 ............................ CAGTCGGGGGGCCAGAAGATAACCCAAACCAT 1341537 28 100.0 32 ............................ TGGCCGAGTTGGCCAAGCTGCGGGAAGAAGCC 1341597 28 100.0 33 ............................ CGCTCTTCGCCGTGATACTGGTACTGGCTGACC 1341658 28 100.0 32 ............................ AGGAAGATACAGAGCGGGTATGAGGCGCTTGA 1341718 28 100.0 32 ............................ CCTCCGCCGCTGCTTCGCGGTCTTTACACAAA 1341778 28 100.0 32 ............................ CACAAAAAAGAGATCACCAAGGCCCTGACTCA 1341838 28 100.0 32 ............................ TACCCTACCACTCGACAGGAAAAACGCAGGAG 1341898 28 100.0 32 ............................ CTATATTCACCCCGTTAAAGTCATGGAGGCCT 1341958 28 100.0 32 ............................ AAATTCTTTGATTGGGAAGTGCGCGTTACGAC 1342018 28 100.0 32 ............................ TCGCGCTCGACCTGCGGGACAATGCCCCGGAC 1342078 28 100.0 32 ............................ ACTGCCGAGCTTTTGACGTGGTTCGACAGCGA 1342138 28 100.0 32 ............................ GCTTTATCTTGCCTCCGCTGATCGAGAGTGAG 1342198 28 100.0 32 ............................ AAGCCAGACCCAAAGAAGTCTTGTCCCCATGG 1342258 28 100.0 32 ............................ CGTCGGGCATCTTTCCCTGCAATAGTTCCTGC 1342318 28 100.0 32 ............................ ATATGAATGAAGAGGGAGACACGCTAGATAAA 1342378 28 100.0 32 ............................ ATATGGCCGAGGTATCCGAGCGCCTCGCTGCT 1342438 28 100.0 32 ............................ CACGAACACACCCATCGCCAGAAAGGTATTTC 1342498 28 100.0 32 ............................ ATGTAGCAGATCGTGTTCACCCGGTCCGGGAC 1342558 28 100.0 32 ............................ AGGTCGCGCGCGGCCTGCTCTTCCTGGGCTTT 1342618 28 100.0 32 ............................ CATGCGTTTTGTCGCATGGGCTACCGTATGGC 1342678 28 100.0 32 ............................ ACCATGGGACGGCTGATCGGCAAGCTCGTCAG 1342738 28 100.0 32 ............................ TTATCGCTCACATTCAAAAAGGAGACCCCATT 1342798 28 100.0 32 ............................ AGGATGGAAAAGGGCTGGATGATATCTTTGAA 1342858 28 100.0 32 ............................ ACGTATCTGCGGGGCGAGAGATGGACGGATGC 1342918 28 100.0 32 ............................ AGTTCCGACTCGCTGGCCGAGAGCATCATCGA 1342978 28 100.0 32 ............................ TTTCCCAATTTTCAGATAGCCCCTCCCTGATT 1343038 28 100.0 32 ............................ ATTCGTGATCTCGCCAAACGTGAGATCATCCA 1343098 28 100.0 32 ............................ AATGTCACTATCAACGATGCGGGTGAACAGAA 1343158 28 100.0 32 ............................ AGCGAGATCAAGCTGCTCATGACTCCCACACT 1343218 28 100.0 32 ............................ GTGTGACTTCACCAGAGCCAACATGCGCCGCC 1343278 28 100.0 32 ............................ ACAACGCGCGGGAATCCGTGCCGCTGCATGTA 1343338 28 100.0 32 ............................ TAATTGCCATAAGCCGGTTCTGTCCATCGAGC 1343398 28 100.0 32 ............................ ACATGATGTCGCCCGAAGAATCTGCGTCGTAT 1343458 28 100.0 32 ............................ GTGCGGTTCGGGATGCCGCTGACCTACACCAT 1343518 28 100.0 32 ............................ AGAAAATCGCCACGTAGTATAGGATAGTCACC 1343578 28 100.0 32 ............................ ATGATTGGCTCAGTGGGTTCCGTGGTGTTGCA 1343638 28 100.0 32 ............................ TCATGTTCCAGGGCCTGAACGTGGCGAACACC 1343698 28 100.0 32 ............................ TGGACGAATACGAGTTGATGACCATCCGGTAT 1343758 28 100.0 32 ............................ AGTATCCTGCAATCGCTGGGAACCCTGGAAAG 1343818 28 100.0 32 ............................ ATAGGCATCTTTACAAAATGACTCCAATGTTG 1343878 28 100.0 32 ............................ AGCAATGGCGCGGTGGTATTGCCCCCGGAAAG 1343938 28 100.0 32 ............................ AAGATCATTAGGATACGATCGAGTTTAGTATC 1343998 28 100.0 32 ............................ CAGCGTGCCAACTTCGGCATCTTGGACTTCAA 1344058 28 100.0 31 ............................ TCATCCCTCAGTATTTGACCATGGACGAGCT 1344117 28 89.3 32 AG...A...................... GTGCAAGGGCATGACGCGTGTAATGGCCGAGA 1344177 28 100.0 32 ............................ GAGCCGGTCCATCTGTTTTACCCATCTGCCCC 1344237 28 100.0 32 ............................ TTTATCATTTCAAAGCCTCCATAACTTTAACT 1344297 28 100.0 32 ............................ ATGTTGCCGCGCAATGGTGGGCAATAGATCAC 1344357 28 100.0 32 ............................ CAATCAGCCGCACTCACATAATCCTCAAGCGC 1344417 28 100.0 32 ............................ GATAATTTCTTTTACGAAGCCTGCAACAACAA 1344477 28 100.0 32 ............................ GCATGGGGTATCTCGTGCGGCCAAGGCATTAC 1344537 28 100.0 32 ............................ ATTTTCCACATCCTCCAATTCGTCCAAGATCA 1344597 28 100.0 32 ............................ ATTACGCGGGTCATCCCCTTGCATGGCTTGTA 1344657 28 100.0 32 ............................ ATAGATTCATGCTGGCTAAACCCAAGGTAATT 1344717 28 100.0 32 ............................ AGCTTGCTTCCTCCCGGTCTAAGGCTTCCTGA 1344777 28 100.0 32 ............................ ACAGGTGCCGCTCATGCCGGGACTCAGGGTTA 1344837 28 100.0 32 ............................ TGCAACGGCTGGCGGATGACATGCACCAGCTG 1344897 28 100.0 32 ............................ AGGTCCACCAATTCCCCCGTCCTGCCGGGTAA 1344957 28 100.0 32 ............................ ATCCCGAACGCATCGTCAAATCTGGCGACCGA 1345017 28 100.0 32 ............................ TTCCCCATGCTCATTGCCCGGTAGCAGTGGCA 1345077 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 80 28 99.9 32 GTTTATCGCCGCATAGGCGATTGAGAAG # Left flank : GTTCGCAAAGACGCTATACGCGTCTCTAGCGTCTGCTTATTCTATACCGAAATTCATAAGAGATGCCGGAGCCAAGAAGAAAGACAACCCTGAACAGAGGGTGAATAGCTTTCTGGATCACGGCAACTATCTCGCCTATGGATATGCCGCAGTGGCGTTGCATGGAATGGGTGTACCCTATTTCCTGCCAGTGCTTCACGGTAAGACCAGAAGGGGTGCTTTGGTGTTCGACGTAGCAGATCTTTTCAAGGATTGGCTGGTGATGCCGCTGGCGTTTCGATGTGCGTCTGAAAAAGCAAAGAATAACCAGTTCAGGGCTGAGGTGATCGAGCATGCCCTGAAGCATGAGGTGTTGGATGATGTGATGGGCTTCATTTCTACTCTTCCAGAGAAAGTAACATAAAATCAGGTGTTTATGATTTATCGCGAAATTCGATGTGTTTACGTCAAAAAGACAACCAATGATATGATTATCATAGGCTTTGTACTTTGAGAGTCTA # Right flank : GACGTGGATCGATTGTCTGGCGCGCTCGACGTTCGACCTGTTCGCGACCGTCAAACAGATCGCTCCATGCGACCGAAGCACCGAGTGCGCGTGATGATATCCGTCGACGGTTGTCCGTCGCTCAGTCTGTGAAGGTGTGACAAATTTGTGCCACGGCGAAACCTAAGTTCCTGGCGTGTGACCTGCGTTTTGCCGCCTGTACATAGCTCTCGAAATAGGCTTGTACCAAGGCGGCCTGGTGCAAGGCATCCATCACCGATTCTGCACGTTGGTTCAGCAGGCAGACGGGTATGGATATCTCTGGACCACGATAACACTGAACAAAGGAGATGCGAGAGTGGCGCTATCCCTCCCCGGCATGAATGCCGGGTTTCCCGCGCAAACTGGATAAAAAGACCCGCCAACTAGACGGGTTGCCCAAGGTATCCGGTGCAAATCCGGTGCAGAATCGTGCAATTTTTGGCATTGCAAAGAAATGCAATCTACTGAAAATCAAGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATCGCCGCATAGGCGATTGAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCATCGCCGCACAGGCGATTGAGAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //