Array 1 171212-173315 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOF01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171212 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171273 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171334 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171395 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171456 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171517 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171578 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171639 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171700 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171761 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171822 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171883 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171944 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172005 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172066 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172127 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172188 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172249 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172310 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 172371 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172432 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172493 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172555 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172616 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172677 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172738 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172799 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172861 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172922 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172983 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173044 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173105 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173166 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173227 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173288 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189823-191560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOF01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189823 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189884 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189945 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190006 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190067 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190128 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190189 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190250 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190311 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190372 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190433 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190494 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190555 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190616 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 190677 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 190738 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 190799 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 190860 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 190921 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 190982 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191043 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191104 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191165 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191226 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191287 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191348 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191409 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191470 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191531 29 93.1 0 A...........T................ | A [191557] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //