Array 1 1422-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXQ01000027.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_2845 NODE_27_length_70135_cov_2.17074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1421 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 1360 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 1299 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 1238 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 1177 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 1116 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 1055 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 994 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 933 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 872 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 811 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 750 29 100.0 32 ............................. CCGTACCCGCCGTTTCCATAGGACTCATTCAT 689 29 100.0 32 ............................. GGATTGGGGGGACGTCAATATTAAACCCGATG 628 29 100.0 32 ............................. TTGCTGGAGCGTGAATTCACATCTGAGAACGG 567 29 100.0 32 ............................. ATCCAGTTAGCATCGGTACGCCAGTGCCCGAC 506 29 100.0 32 ............................. GAGTGGAGAAATGATTGATTTTAGTCTCGACT 445 29 100.0 32 ............................. TAAATGGTGCGCCGACCAGGCATTACCGCATA 384 29 100.0 32 ............................. GACTGGCTAATCACGGTTAACGCCGTGCCGGT 323 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 262 29 96.6 32 ............T................ AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 201 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 140 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GGAGACGCCAGATGAATTCTGCGGGACAAGAGAGTGTTCCCCGCGTCAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18993-17986 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXQ01000027.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_2845 NODE_27_length_70135_cov_2.17074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 18992 29 100.0 32 ............................. TGGATGGTAATCCTGTCGTATCAGGGATGACA 18931 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 18870 29 100.0 32 ............................. TGTGGTGGATCAAATACCACGACAGGAAACGA 18809 29 100.0 32 ............................. TCGCGCGAGATTTATTTAAAGAGGGTAATTCA 18748 29 100.0 32 ............................. TCCAGGCTGAATAATTTCGGCGACGGCTTCGG 18687 29 100.0 32 ............................. CTGATAACATTCGGCGCGCTGGAAAATTCAAG 18626 29 100.0 32 ............................. TGGAATCAAGTTTTACTCGCTGGCTGAGGGCG 18565 29 100.0 32 ............................. AGTCCTCTTCTGACTCTTTCCGTTATATCAGT 18504 29 96.6 35 ............................A CCGGACTCCTCACCGGGCATAGTAATAAATGGGAT 18440 29 100.0 32 ............................. CTGGCGCCGAATTTTTCTTTGAGGGTCTGCAA 18379 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 18318 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 18257 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 18196 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 18135 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 18074 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 18013 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= =================================== ================== 17 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108291-107956 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXQ01000013.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_2845 NODE_13_length_108347_cov_2.48403, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108290 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 108229 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 108168 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 108107 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 108046 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 107985 29 100.0 0 ............................. | A [107958] ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGTCAGCGGGGATAAACCGAACGCAGGAGAACCAGCCGCCGGTCATCCTG # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //