Array 1 140805-142052 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIL01000004.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2055 NODE_4_length_266233_cov_5.3695, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 140805 29 100.0 32 ............................. TAAACACATTGACTTTATCGCGATAAGCTATA 140866 29 100.0 32 ............................. ACTGATATAGATTCTATCCTGTCGGCGTCCCA 140927 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 140988 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 141049 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 141110 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 141171 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 141232 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 141293 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 141354 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 141415 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 141476 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 141537 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 141598 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 141659 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 141720 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 141781 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 141842 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 141903 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 141964 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 142025 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 158312-160094 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIL01000004.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2055 NODE_4_length_266233_cov_5.3695, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 158312 29 100.0 33 ............................. TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTGC 158374 29 100.0 33 ............................. GTGCGCGTGGAGCGCCTTAATTCAATTACTGAA 158436 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 158497 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 158558 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 158619 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 158680 29 96.6 32 ...........A................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 158741 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 158802 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 158863 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 158924 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 158985 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 159046 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 159108 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 159210 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 159271 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 159333 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 159394 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 159455 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 159516 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 159577 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 159638 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 159699 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 159760 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 159821 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 159882 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 159943 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 160004 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 160065 29 96.6 0 ............T................ | A [160092] ========== ====== ====== ====== ============================= ========================================================================= ================== 29 29 99.8 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //