Array 1 31620-30639 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGS01000009.1 Anaerococcus octavius strain UMB0119 ERR1203630.17957_1_42.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 31619 32 100.0 37 ................................ AGTATTACCTCTTACTTTATCAATTATCTTCATTCCT 31550 32 100.0 34 ................................ CAGATTGGTTATCAAGGGCTTTTAAAACTGGCTC 31484 32 100.0 35 ................................ TCACAGTTGGTTACCACTTGTGTTAGTGAGGGTTG 31417 32 100.0 37 ................................ ATAAAAAGTGTGATAAAAGAATTGTACAGAGTGTTAA 31348 32 100.0 37 ................................ TTACCCAGATGGAAGGCCGCGTGAAGTTGTAATAGAT 31279 32 100.0 36 ................................ TTGGATTGACCCCATGTGTAGCCATTAGATCAAACC 31211 32 100.0 36 ................................ TCTTACCCACTGCCGCTAAACATGAACCATCCGTAT 31143 32 100.0 36 ................................ AAGAGAAGATAAGTGGAATGTTGTAAAATATGAATA 31075 32 100.0 36 ................................ TTATCATTTAGCTGATGAAAGTTTTAGTACATACTT 31007 32 100.0 35 ................................ GCTATCTCTAAAGTATGCGTCATCTTCTTCGTCAT 30940 32 100.0 36 ................................ AAAGTCATCTTGATTGCTCTCAACTATATTAGCCAA 30872 32 96.9 35 .........T...................... GTTGAATTTGGCCTTATTAGTGAAATGGCTAATGG 30805 32 96.9 35 .........T...................... TGCATTTGCTTACGCCCAGCATTTGTTACTTGCTT 30738 32 96.9 36 .........T...................... TTTGTTATTCCAATCACGAGAATTAAAAATCAATTG 30670 32 96.9 0 .........T...................... | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 99.2 36 GTCACCTCCCATACGGAGGTGTGGATTGAAAT # Left flank : ACATGTGCAAGCTATGCTTTTAAATAGGTATATAAGAGGAGATTTAGAAGCTTATCCACCATTTCTGATGAAAGGTTAATTATTATGATGGTGTTGATCACTTATGATGTAAATACAAATTCGGAATTAGGTACTAAAAGACTAAGGAAAGTAGCAAAACAGTGCGTCAATTATGGTCAAAGAGTTCAAAATTCTGTATTTGAATGTTCACTTACACCTGCTCAATTAGTTAATTTAAAAAAGAAACTATTAGATATAATAGATGAAGAAAATGATAGTATTAGATTTTATAATTTAGGAAAAAATTGGCAAAATAGAGTGGAAATCTTAGGAAAAGATGACAGCTACGATCCTGACAAAGACCTGCTTATAATATAGACAACCCCAATCAACCATAAAACACTGGAGCACTCGCGCTATATATGAGTATAATATGATGAATTTTATGAGTTTTCGTATTTTTTCTAATAAAATTCATACAAAAACCCCTAAAAAATGCG # Right flank : TTCCACTGAGGTACCCATAGTCTTAGCTAATGCTGGTAGTCACCTCCCATACGAACCATCACTATTTGATTTTTATAACCAATTAAATAAAAATTATAAATCTTTATATCTTCTTAACCAAACTCGGAGTATGATATACTTATAAATTAATACTTATATTTTATAGAAAGGGATGGTTTTATGTCTGATAGACGTGAAAATAAAAATGGTTCTATGTCTTCTTTTGCTTCTGCTTTGATAGGAGCGATCATTGGGGGACTTTTGGTGTTTTTACTTACTAATGGCTTTGGGGCTAAGAAAAATAGTTCAAAGGATCCTGATCCGGTAGAAACTCCTAAAACCGAAGAAAAAGCTGATAATAATGAAAATAATTCTTCTAAAAAGAAGATTATTAAGAATATTGGTAACCTTGATTCTGATGATACTAGTATATCTATGGAATCTAAGGTTGTTAAAAAATCTATTGATAGTGTAGTTGGTATTACTACAAAAGCTGAGGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTCCCATACGGAGGTGTGGATTGAAAT # Alternate repeat : GTCACCTCCTATACGGAGGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACCTCCTACACGGAGGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 151111-152543 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGS01000002.1 Anaerococcus octavius strain UMB0119 ERR1203630.17957_1_42.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151111 29 100.0 32 ............................. AATATAGAGCAGATAGATTATAAATATGATTT 151172 29 100.0 32 ............................. ATTTTAGATCAGTTTGATAAAGATCCTGTAAA 151233 29 96.6 32 ............................C ATAGTAGCCATCACGTCGACAATCCATAGCCA 151294 29 100.0 32 ............................. CTTTTATCTAAGCCAAATCAACAAGCAATTAA 151355 29 100.0 32 ............................. TATCATGTGTTTTATAAATTGTTAGAAAAGCA 151416 29 100.0 32 ............................. AATGTATCCAATAATTTACTTCGTCAAATTCT 151477 29 100.0 32 ............................. GGTTAAAAACTAGAGAGTATAATTTTTCTTTT 151538 29 100.0 32 ............................. ATAGCTATAACATGATATTTTATTTATTTTTA 151599 29 100.0 32 ............................. TAGTGAAAGTAAATTGAATTTTATTTACTATC 151660 29 100.0 32 ............................. TACCCGTTTCGCAATTATCATAGTAAGTTATC 151721 29 100.0 32 ............................. AATGACTTTTACACAAGGTAAGGTTTTAAATA 151782 29 100.0 32 ............................. ATGATTTGCAAGCTCACGTAAAATATTATTAT 151843 29 100.0 32 ............................. ATTAGTAAAAAGAGGCTCTTTATCAGCCCCTT 151904 29 100.0 32 ............................. AAACTACTCTCATAAATCCCCAACTAGATGGT 151965 29 100.0 32 ............................. GGATATGAAAAAGTATTTTTTTCTAAAGCTTT 152026 29 100.0 32 ............................. AACTATAAATATCTTAGTAAAGTTCCAATACC 152087 29 100.0 32 ............................. TTAATAGATTACAGTTTTGAATTGTTGGAATT 152148 29 100.0 32 ............................. GATATTGTGTTAGTTTGCTAAAATTACAACTG 152209 29 100.0 32 ............................. AACAATATAGTAGATATAAGAGAATTTGCAAC 152270 29 100.0 32 ............................. TGCCAAACAAAACGGATTTAGAATAAAATAAA 152331 29 96.6 32 ............................C TACTCTAACAACGGTATTAGTTATAACGACAA 152392 29 100.0 32 ............................. TTGTGCCTGTGGCGTGTCCTGTTATTTTCGAT 152453 29 100.0 32 ............................. ACAGAGACCCTTTTTAAGCTAAAAGGCAAGTA 152514 29 93.1 0 .........A..................A | T [152539] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.4 32 GTTTATCCCGCATACGCGGGGGTGATCCT # Left flank : TTTTAATAAAAATAGTATAATAGAAATTGGATGTGTAAAACTCTATAATGGAAATTTAGAAGAATTTGCTACATCCATAAAAATAGATCATAGTTTACCTAAAGAAATAGTAAACCTTACCGGAATAACTGATGAGTTTTTAGAAAAAAATGGAGAAGATGAAAAAGAAGCTCTAAGAGAACTGCTGGATTTTATCAAGGAGTTAACTATAGTAAATTACGGAAATAACTTTGATATAAATTTTTTAAATAAGTCTCTAAATAAACATAATTTAGGACATATAAAAAATCAGACCATAGACTTAATGAGATATGTAAAAAAAGAAAAAATAATGCTAGAAAACTATAAACTAGAAACAGCATTAAAATCATATGGGATCGATAAAAAAGTACCACACAGGGCCATAGCTGATGCCAGATTAACCTATGAGCTTTCAACAAAAGTAAATTTTTTTAAAGAAAAAATAAAAAAGGATGGCTAAAAATAAGGATCAAATTACT # Right flank : AATAATTTAGGAACAACTAAAGTAGTACCAATTGAAAACATTTGTTCTGATGTAAAACGAACTATTAGCCTTACTAAGCTTATCGAAGATTATGATATAGATGGTGTTATTTCTACTATAAATAAAATAAAAACTTCAAAATACGCACAAAGATTTGTAATAAACTTTGATTGGTTTTTAGATGAAAAGAATTTTTTGAAAGTGAGAAATAGCTAATATCTTCTATGATTTTAAATATTTTAGTAGGTATAATCTTTATAAAACAATAGCTTAGAAAGGTTAGTAATGGCATATATAGAAATTAGTAATTTAACAAAAGAATATAAATCTGGTAGTTCTAGAATAGTTGCCAATGATGATATAAGCTTTGACTTAGAACGCAGCAGATTATTAGTAATAGTAGGTGCTTCGGGTGCTGGAAAAACTACTCTTTTAAATATATTAGGTGGCATGGAACAAGCTAGCAGCGGAGAAGTTTTAATTGATAAAAAAGATCTTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATCCCGCATACGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTACCCCGCATGCGCGGGGATGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //