Array 1 95090-94572 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDG01000011.1 Escherichia coli strain NS-NP041 sequence011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95089 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 95028 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 94966 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 94905 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 94844 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 94783 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 94722 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 94661 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 94600 28 75.9 0 .A.........C..T....T-.G.....C | C [94575] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18537-16983 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDG01000072.1 Escherichia coli strain NS-NP041 sequence072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18536 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGACGTA 18475 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 18414 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 18353 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 18292 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 18231 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 18170 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 18109 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 18048 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 17987 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 17926 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 17865 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 17804 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 17743 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 17682 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 17621 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 17560 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 17499 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 17438 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 17377 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 17316 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 17255 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 17194 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 17133 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 17072 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 17011 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //