Array 1 19015-20436 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHHK01000011.1 Streptococcus thermophilus strain St-2 NODE_11_length_58732_cov_3.31317_ID_5234, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19015 36 100.0 30 .................................... AAAAGTTTGGCTTTTTATTTTAGAAAAGAT 19081 36 100.0 30 .................................... ACTTTTTACAAAACTCACACAAGAATAGTC 19147 36 100.0 30 .................................... ATCTTTGAGTTTTGGGAAGTGTTCACGTGC 19213 36 100.0 30 .................................... TTGAAGTATAATATAATCAAGATAGATAGA 19279 36 100.0 30 .................................... AATGCAGAGGTAGAAGAAGCGTATAGCTCA 19345 36 100.0 30 .................................... CGCCATTCTGCATGAGTTGAATTGTCATGT 19411 36 100.0 30 .................................... AGTCTCTTTGACTGTTCGAATATCTACCAT 19477 36 100.0 30 .................................... TTAATTCAACGATTTTACGAGCTTTCTTTT 19543 36 100.0 30 .................................... AGAAAGACTTCAACAGTCCAGAGAAAATAA 19609 36 97.2 30 ........................C........... CCTGACGCATATGGAAATCCTAACGGTCAG 19675 36 100.0 30 .................................... AGCTGCCAAAGATTATTTTGCAGAGAATTA 19741 36 100.0 30 .................................... AACGACTGCACAGCGGCAGTATGGGTGAAT 19807 36 100.0 30 .................................... TGATGAAGTCAACATCACAGACACAGGGAA 19873 36 100.0 30 .................................... ACCTAACACACTTGTGTGTCCGTAGCTTCC 19939 36 100.0 30 .................................... AAAATGGAATTCCTGTTGATATGGTTAACT 20005 36 100.0 30 .................................... CACTAGCAATGCCTTGCAAGGCTGCCCCAA 20071 36 100.0 30 .................................... TGGTAGCAAGACTGGAATTTAAACTGTAGG 20137 36 100.0 30 .................................... AACAGGTAGTAGATGGAATATTAAAGAAAT 20203 36 100.0 30 .................................... TTCATTTCTTCCTCAACCTCATACCCAAAC 20269 36 100.0 30 .................................... ACGTTCTTCGCTAGTTCTTCTAGCATAAGC 20335 36 100.0 30 .................................... ACATCTGGAACGGTAGCACCAACGAATGGT 20401 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATTTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGTAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 141376-143258 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHHK01000002.1 Streptococcus thermophilus strain St-2 NODE_2_length_158377_cov_3.69992_ID_5216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 141376 36 100.0 31 .................................... TTGTAGAAATGATAGGAAAAACATCTAACAA 141443 36 100.0 30 .................................... TACTCCTTTCTAAAGCCCTTCATGACACCC 141509 36 100.0 30 .................................... TCAGCCACCGATTTATCTTTAGATGAACCT 141575 36 100.0 30 .................................... GACGGTTTATTATCCAACTTTCTGAAATTA 141641 36 100.0 30 .................................... GTGAGAATTTAATCACTAACTCATCTTTCC 141707 36 100.0 30 .................................... CTTTAGGTCCTTGTTTACCATCTGATACAT 141773 36 100.0 30 .................................... GACGTAGGGCGTTATCCCTTAAAACTAGCA 141839 36 100.0 30 .................................... TGCAGAAATAAGATAATGAGAATAGCAGGT 141905 36 100.0 30 .................................... AAACTAAACGAAAAGAAATTGCAAAAGTTT 141971 36 100.0 30 .................................... GAGCAGTTTATGAAAGAGCTTAATTGCTCA 142037 36 100.0 30 .................................... TAGATGAGACAGCGACGAGCCTAGCGCATA 142103 36 100.0 30 .................................... TATTTTTTTGAAAAAAATGTTGACAAAGTA 142169 36 100.0 29 .................................... AGAGGTTAAAGCTGGTTTTGTTAAAGACT 142234 36 100.0 30 .................................... GTCCTTTTTGAACAATCTGAGTGACAAGGG 142300 36 100.0 30 .................................... TAGCTTGCTACCAGTAATGCAAACCAGATT 142366 36 100.0 30 .................................... ACGAAGCCAAGAACCTATTCCGTCTGGTCG 142432 36 100.0 30 .................................... TCCAATGTACTTTTATTGACATAGATTTTG 142498 36 100.0 30 .................................... AATATTTTAATGGTTTGACACAGGTAACTA 142564 36 100.0 30 .................................... CGGTTTGGGTAATTCTATCCAAAATCAACA 142630 36 100.0 30 .................................... ATTTTTTCGGTGAAGGTTCCTGTAATCCCT 142696 36 100.0 30 .................................... CAAGCATAGGTTTTACCGTTGGAACGTTCC 142762 36 100.0 30 .................................... AACAGTTTAGCGAATAAACGAATACAACGA 142828 36 100.0 30 .................................... ACGGTAAGGGAGGTTTCCGTATTGTCGACA 142894 36 100.0 30 .................................... GAACCCTTGATATTACTGACTTTTTGAACA 142960 36 97.2 30 .................G.................. CTGGTAAACTATTACCAATAGACCACGCAA 143026 36 100.0 29 .................................... TGGCTTTTATAGGTTTTCTGTCATCTACA 143091 36 100.0 30 .................................... ATGGTAGCTCCGCTCTTGGCTTGTGCTCCA 143157 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 143223 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //