Array 1 18973-18676 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVRB01000006.1 Bacillus sp. LNXM65 NODE_6_length_313667_cov_78.1521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18972 32 93.8 34 ...........C......T............. CGCCGTAGGTGTTGACCTTCCCCCATTTTTTCGT 18906 32 100.0 34 ................................ TTGTAAAACTTAGCATTGAATTTTGTGGCTGCCC 18840 32 93.8 33 A..........C.................... TTGGAATTTCTTGGAGTCTCTCAGTCTCTTCGT 18775 32 87.5 35 ...........C..........AA..G..... ATTTCCAACAGTAATAAATTTACCTTGTCCTTCAA 18708 32 93.8 0 ...................T.......A.... | T [18679] ========== ====== ====== ====== ================================ =================================== ================== 5 32 93.8 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CCTGAGACGGTAGGAGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCAGAATGGCTCGAACTCGCCAAAACCCTTTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGAATAGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATTGCA # Right flank : TGTGAAAAACATGACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAAATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTAAGGTTTTTGACGATCATTACCTAAAAAATGTTATAATTAGGGCGAAAATTGCAGTCGCACTCTACATGAGTGTGTGGATTGAAATATACCGTGTATAATCACTTGTGTATGTCTTACTCGTCGCACTCTCCATGAGTACGTGGATTGAAATATAAGTAATTGGAACATGGTTAACACATCCTTCTGTCGCACTCTACATGAGTGCGTGGATTGAAATATCATATCTTCAACCGAATTACGCAACGTCATCAATCGCACTCTCCATGA # Questionable array : NO Score: 6.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 26842-26615 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVRB01000006.1 Bacillus sp. LNXM65 NODE_6_length_313667_cov_78.1521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 26841 32 100.0 33 ................................ ATTTTCTGTTCTTGCTCGGCGCGCATTTCCAAT 26776 32 100.0 34 ................................ CATGAGACATATAACAATCGATTCCCGCACGTAG 26710 32 100.0 32 ................................ TTCCATCTGCAACCGTTGTTTATATCCATCAA 26646 32 84.4 0 .............A.......C.AT..T.... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 96.1 33 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTAAAAAATGTTACATTTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGAATTGAAATTTCGAGTGTAACGACATGAACTCCATTAGACACTAGTCGCACTCTACATGAGTGCGTGAATTGAAATCCAATCCACATCATATTGGCCCAAATTTGTGTTAGTCGCACTCTATATGAGTGCGTGAATTGAAATGATGCTAGTGATTCCATTACAAAGTCCCCCATAGGGTCGCACTCTATATGAGTGGGAGGAATAAAATTCTTGTCAGTAGGTAGCTTGAATCATGAGTAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCAAATGTGAGGTGAACATAAAATCCTTGGTGCATTCGCACCTTTTTATTCGTTAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCGTATAGAAAATTAAGGGTTTTGGCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : GATTGTCTCTTAAACGGGTATGGCCACCTCAAATCCATCTTCTTACAATATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAACCATGGCGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGTTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAGCAGTA # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 28130-27636 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVRB01000006.1 Bacillus sp. LNXM65 NODE_6_length_313667_cov_78.1521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 28129 32 100.0 34 ................................ TCTATTAACATCATTTCCCAAGTGAGTATAAACC 28063 32 100.0 35 ................................ CGTAAGTACCAACCGTCTTCTTGGAGAGCGAAAGC 27996 32 100.0 33 ................................ GGAACATAGACAACCTTTCCGGTTTGTTTTGCT 27931 32 100.0 33 ................................ TTGTCGAAGCCTGTGAATTTCACAGTGTAAAGA 27866 32 100.0 34 ................................ TTACTATCTGTATAACTTTCGGAGACGGATTTGA 27800 32 87.5 35 ......T....TT...........G....... TCGGTATCGTCACTCTACCTCGGATATGCAAAAAC 27733 31 93.8 35 ...........T.....-.............. AATGATTGTGTGACCATGCTCAGGTGCTTCTATTT 27667 32 84.4 0 ........T..........TA........GG. | ========== ====== ====== ====== ================================ =================================== ================== 8 32 95.7 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AATTGTCGCACTCTATATGAGTGCGTGGATTGAAATATCAATGTCTGTCGCCATTGCTTTTTTACCAAGTCGCACTCTATATGAGGCGTGGATTTAAATAATGATTGTGTGACCGTGCTCAGGTGCTTCTATGTGTCGCACTTTACAGGAGTGTATGGATTGAGATAGCTTGAAAAAAATGTTGACAGTTGGGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGGACATAAAATCCCCGGAACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAAAGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : AGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGTCATATTTTTAAATGAATTCAAACCTGTTGATGAAATCATGAAAATACCTTTAGAGCAATAGTTGTTAATTAAATAGGATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTCATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTTGACTATTATTTCCTAAAAAATGTTACATTTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGAATTGAAATTTCGAGTGTAACGACATGAACTCCATTAGACACTAGTCGCACTCTACATGAGTGCGTGAATTGAAATCCAATCCACATCATATTGGCCCAAATTTGTGTTAGTCGCACTCTATATGAGTGCGTGAATTGAAATGATGCTAG # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 28762-28464 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVRB01000006.1 Bacillus sp. LNXM65 NODE_6_length_313667_cov_78.1521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28761 32 100.0 36 ................................ TCCATCAGAACGGATCTCAATTGGCGTCGTGAGCAG 28693 32 96.9 36 ..................A............. TGACCTAGTCCCTCGTTATTATAAAGGTGAAAAATT 28625 32 100.0 32 ................................ ATCAATGTCTGTCGCCATTGCTTTTTTACCAA 28561 31 93.8 35 .................-.........T.... AATGATTGTGTGACCGTGCTCAGGTGCTTCTATGT 28495 32 81.2 0 ........T..C.G.....TA........G.. | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 94.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AATGAAAGAAATAGCCGATCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGGGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTAATCGAAAAAGTAGATCGGCTGATTTACCAAGAGGGGCCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGTGAACTGATGGTGCGAATGTGAGGTGAACATAAACCCCGGTGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTGTGAAGGGAAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTGCCTTTCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : AGCTTGAAAAAAATGTTGACAGTTGGGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGGACATAAAATCCCCGGAACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAAAGGTGAAAACAAAATTCTATATAGAAAATTGAGGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCTATTAACATCATTTCCCAAGTGAGTATAAACCGTCGCACTCTACATGAGTGCGTGGATTGAAATCGTAAGTACCAACCGTCTTCTTGGAGAGCGAAAGCGTCGCACTCTACATGAGTGCGTGGATTGAAATG # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //