Array 1 271425-270004 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZP01000001.1 Campylobacter geochelonis strain RC20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 271424 36 100.0 30 .................................... TAAATATGACAATAAAAGGCATAAATATGG 271358 36 100.0 30 .................................... AGTGCCAAATCAACAGAAGCAGAATTAACG 271292 36 100.0 30 .................................... CAAAACCGAATTAGAAAAAGTAACAATACC 271226 36 100.0 29 .................................... TCTTTTTTACCTGCTGATTTTTCAACTGG 271161 36 100.0 30 .................................... ACAAAGCAGGTAATGTAGCAAGCAATCTTG 271095 36 100.0 29 .................................... TTAACCGCACTCATCAAAAAATCCAGACT 271030 36 100.0 30 .................................... CAGGTATGCGAACTGGAGAAATTTTAGCTT 270964 36 100.0 29 .................................... AAATCTTTAAAAATCTATGATTTTGTAGA 270899 36 100.0 30 .................................... TTATTTGACAAAATAGTGGGCAATGATAAT 270833 36 100.0 30 .................................... GGTTTGATGAGTTTGTAGCAAACACAGTAG 270767 36 100.0 29 .................................... TAGATAATCCTTGCCCCTGTCGCCTTTTA 270702 36 100.0 30 .................................... GCTCTTGATAATATCTTGGTGTATCCCTAT 270636 36 100.0 30 .................................... ATGTGTTATCAAATGGGCATTGCAAAGGTA 270570 36 100.0 30 .................................... AGATAAAAGTCTTAGTTCTTGTAACACATT 270504 36 100.0 29 .................................... TTGTATCAAACTCTTGACCGACAGGCTCT 270439 36 100.0 30 .................................... CAAGCTTAATTATTACAAACTATTTAACAG 270373 36 100.0 31 .................................... TATAGAAGCTGTAGCTAACCCGATAAGGACA 270306 36 100.0 30 .................................... TCCCACTCTCCATTTATGCTATTTTTACTA 270240 36 100.0 31 .................................... TAAAGTATAGTTATTATGTGATTCCGCCAAA 270173 36 97.2 32 ...................................A ACTCCGAGCGTTAATCAAATAAAGGAAAGTTT 270105 36 100.0 30 .................................... AAGAGCTATACTAGATAAAGCAGATGCTGA 270039 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 22 36 99.9 30 GTTTGAGAGTTGTGTAAATTTGAATGGTAGTAAAAC # Left flank : AAGAGATGGTTTTGAAGGATTTATATCAAGAAAGCCATGAAATTTTAATGGCTTTAAATCGATTTGCAAGTAAGATTGTAAGCAATGTTGACTTTCCTATAGGTTATGATGATATTGAGATCGAAGCGGTTTTAAAATCTTTAAATATTAAAATAATAAAAAGCGATAATTTGCTTGAGCAAATCTTAGATTTGATGATTTTAGAGCGCGATTTTTTACAAACTAAGCTTTTTGTATTTTTTGGATTAAAAACTTTTTTGACCAAAGATGAAGTGTTGCTTCTATACGATGAGATAATTTTGCGGCAATTTAATGTACTTTTAGTAGAGCCATTTTATCAAGAAAGATTAGAGTGTGAAAACATAGTTATCATAGATAAGGATTTTTGTGAGATTAGAAATTAAAATAGTTTTAGATTAATTTTATGTCAATATGGTTAAAATTAATAGTTTGCTATCATAATTTAAGTAGGGTTGTGTCTACTAAACTCTTGATTTGAG # Right flank : AAACTCTTTATTTATGTGTGATGAAAAAAGGGTTCGAGAGTTATTTAATGCAAATATAAGTAATAAAATTTATTAACCATTTTGATATACAATCATCAAAAAGGATAAAAATGTTAAGAAAAATTGACCATTTAAATTTGGGTTCAAGCAACCTTGGTTGGCTACAAAGCAAGTTTCACTTCTCTTTTGCGCAGTATTATAACCCACAAAACATACATTTTGGCGTACTTCGCGTGATAAATGATGACACGATAGCCCCAAAAAGCGGATTTGGAACGCATCCGCACGAAGATATGGAAATCATAACTTATGTCATAAATGGCACTCTTACTCACAAAGACAGCATGGGAAACGAGCGCTCGCTCGGGCGAGGAGATGTGCAGTATCTAAGTGCTGGAGTTGGCATAACTCATAGTGAGTATAACAACTCAGATGAGGTTTTAAGACTGCTTCAAATTTGGATTTTCCCTGATAAAAAAGGGCATAAACCAAACTATGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTTGTGTAAATTTGAATGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 338193-336694 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZP01000001.1 Campylobacter geochelonis strain RC20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 338192 37 100.0 34 ..................................... CGATATTTAGTTACTGATTGTGTTCTATAATCTA 338121 37 100.0 44 ..................................... CTTATTAGGTATCTCCCTGTAATCTATGGAAGGACCAGAGCCTT 338040 37 100.0 39 ..................................... AATTACTCTAGCTGTTGTAGGAAGCTCTTTTAATACCAT 337964 37 100.0 34 ..................................... TTTTAAATCTACAAATGTTAATTGCTAAGTTGGG 337893 37 100.0 40 ..................................... TTAGCATTTCCTTTTACTACAGCATCTCCAAAGACTTCAG 337816 37 100.0 41 ..................................... AAAAATAAAACTATGCGCATCGCTTATGTGAGTTATACTAC 337738 37 100.0 37 ..................................... ACTCTTTCTAACTCTTTTTTAATATTCATTTTTTTTT 337664 37 100.0 44 ..................................... AGCATCTATACTATGGACTATGTTTACCGCTAGGCTTCTCCACT 337583 37 100.0 38 ..................................... GTTAAAAGGGAATTAACAGCCCCTACACCTGTTACCAC 337508 37 97.3 42 .......T............................. AAACTATTAAAGATATTTTTAAAATCTTTATTTTCAATCTTT 337429 37 100.0 44 ..................................... GCTTTCTGATGCCTTTTCGGCTTTTTGTTCCCTTCTAGAGTTGG 337348 37 100.0 36 ..................................... CTAATACTATTACTCTATTTCCTACTGTTCTTGTTT 337275 37 100.0 41 ..................................... TTTTTTATAACTAACGCCTTTTCTTGTTGTGTAGGTTTTTT 337197 37 100.0 40 ..................................... CCTTTGAGGTAGAAATGTTCATCCTCTTTTTTTTCATTTT 337120 37 100.0 45 ..................................... GCTTTGTTGGCGACTGCTGTCGCTACTTGTTGGTCTGACAATTCC 337038 37 100.0 40 ..................................... GCTTTATATGTATAGCCACCATTAACTTAGGTATGTTGAA 336961 37 100.0 43 ..................................... AAGATATAGTTATCTTAAGGAATTTGAAGGAGAAACCTTCAGG 336881 37 100.0 34 ..................................... TTACTAGCTTTGTAACAGTCAACTAAAATGGACT 336810 37 97.3 43 ...........................A......... TCAGTTATGACACCCCAGATGTGGTATTTACCACCCGAGTTTT 336730 37 94.6 0 ..................................G.T | ========== ====== ====== ====== ===================================== ============================================= ================== 20 37 99.5 40 GTTTAGACACTTTCTCCGATTATTAGGGGATTGAAAC # Left flank : TAAACACGGTTTTTATTTTTGGTTCCGCCATGATTTCAATATATTTTAAGATATTTTTAACAAATTTATCACTTTAGAGTTTCTAACTTTTTATATTTTAAAACTCCCAAATTTAGAGCTTTTTGGTTTTTTGCTCTTTTAAAAAAGTTAGAAACTCAATAAATTTAGTATTTTTAAAAACACACTTTCTAATTTTTATAATTATTTAAATTTTAAAAGCCCATTTTTGCGGTATTTTAAAACTTAGATTTTTCTTAAATTTGGAAACTATACGCAGTTTAAAAATTTCCCCATTCGACTTTCTAAATTTTTAAATCTCAAAAACCACCATTTTACCGATACTTTAAGGACAAATTTAGCAAAACTATCGATTTATACATTTTAAAAATCAATAGAGTTTCGAATAAATTCGATCAAATTCAGCTCTCACAGGCTTTTGCTTAAAGAATTTATAATCATTAAAAAAGTATAATCATCTTGCAAATAACTAAATTTACAGT # Right flank : AGAATTTGCATATAAGCAGTAGGTTTTATAAAAATTTAGCTTTAGCCAAATAAAAAAGAGGTATAATTAAATTTAAATTATAAAACTTGGAGAAGATATGGGCGAATTTTTTATGTCTGCTATAACTTATATGGACTATGTTACTATTATCTTTGCTTTTGCGACGATGTTTGCTGTTTTTTGGCAGTGGTATTTCAGAAGAAAAGACAATAACGAAATAACAATTTATATAGATAAAGATGGCGAAAAAAACGAGCTTCCTATCAAAATTTTGCGTAAAAATATCTCTCGCGCTGAGGTATTTGGCATTTTAGGGGCTTTGCATACTGGTCAACAATGGTCGATAAAATACACTTCAACAGTAGAATTTATGCAAGATATTTTACAAATTCAACTGTATAAAAAAGATTTTTTAGAGATAAAACTAACAAGCAATGACAACTTCCAAACAGATATCGACTACTTATAAAAACACCTTTTATAAAATCAAATTAAAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGACACTTTCTCCGATTATTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 46564-46921 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZP01000013.1 Campylobacter geochelonis strain RC20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 46564 30 90.0 35 C....................A...A.... GTCATGATTACATATGTTCCATCTTTATCTAAAAT 46629 30 100.0 35 .............................. TATCTTTTAATAATCTCAAGAACTTTAGCCTTATC 46694 30 100.0 36 .............................. CGCCTAGCGAGGCAATTTCTATAATACCTGCTAGTT 46760 30 100.0 36 .............................. GTGCCTTTGGCTACTATATCTTGCAAATTAATAAGA 46826 30 100.0 36 .............................. AGTGAAGCGAAGCGGAAGGCAGTAGAAATACTGATG 46892 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.3 36 ATTTTGCTTGAACAAATTTTGTATTGAAAC # Left flank : TAACAAAACAAATCTATCATCTCCTAAACTTATGATTCCAGAATGCCCTTGTGCTGGTTGAGCGCTAAAAGGATACATCACGCCTGTTGGTCTGCCATTTGACACACCCTCAAAGGATTTTAGTCTATCGGTTCGCTTTGTTTTTTCAAATTTACCATTTGTGCGAAGCAACTCTGGCGCATCATCTGGGACATTTATAAACGAAGCAGCTGGCAAAATAGCGTGTCCTGCTAATGTGGCGCTAAATTTTTGCTCAGCTAAAAGCTGTGAACCAACTAAGATAAAAGCTACAAAACAGCTAAATTTTTTCATGTTTTCCTCCTGTAATTTTAAGAGAATACTACAGATTAAAAATAACTTTATAGAAACATTTTAATACTTTAATTATTTTATGATATAAACATAGATGAAATTTAAGATAATAAGATGTTTTTGTTGCTTTGTAGCTAAATTTTGTATTAAAAATCTTTAAGTAGACTATAAAAACAGATTTATAAAAT # Right flank : TTGTTTGGTGATAAGAAAATTTAGACATTTAACCTATAAAATTTCCGTGCTATAAGGAAAAATTTAGATAAATTCTAAAAACTTATCTAAATTTATTTTTTATCTATAAAATTCCGCACTCTCTTTTTAATACAAATTACATAAATATTTATTATAATATAAACAGATTATTAAATTTAGGCTCAAGACAAGTTAAAAACTTTTAAAGGGGTTTTTAACTACTATGCTGTCGATGAAAAACAAATACATATACCGTTCCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGCTTGAACAAATTTTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 87753-98098 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZP01000002.1 Campylobacter geochelonis strain RC20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 87753 30 100.0 36 .............................. AGATGTGGCTCGAACGTTCTAAGATAAATCATATTG 87819 30 100.0 35 .............................. TTTATAAAAGCGTGTGCGTATCTGTTTTGTTGTGA 87884 30 100.0 35 .............................. GCTTGAGATTGTAAGGCGTTGTATCAAAGGCAATT 87949 30 100.0 37 .............................. GTTTGTTTTATTTCTAAATTTCCATATTTCATATGGG 88016 30 100.0 36 .............................. AGTTCTAATAATGTTGATATATTAATTAATGGCGAT 88082 30 100.0 36 .............................. ACCCTAACCATAAAAAATCCAAAAACGCTAAATTTG 88148 30 100.0 35 .............................. TCGCGAATAACTATTATTTCTTTTAAGTCGGTTTT 88213 30 100.0 37 .............................. ACCCTATTGTATTCCCATTCTTCAAAAGAAATTTTTT 88280 30 100.0 35 .............................. TCTGGTATTAGATTGTATTTTACTATCAAGAATGG 88345 30 100.0 35 .............................. AGTTTTATTTTTTCTTGTCCATTTTTTTTAATCTT 88410 30 100.0 35 .............................. TCCCCTATAGGGATTAAATCTAGATACTCGATTTG 88475 30 100.0 39 .............................. TTTAGTTTTGAAGTGATTAAAATTTCAACACTTTCTAAA 88544 30 100.0 37 .............................. TTGTGAACTTGAGCTGCAGCTAAGCTTCCAGAACTTA 88611 30 100.0 35 .............................. TTTAAATCCTTATAGCTACTGTTTCTGTAAAGTTG 88676 30 100.0 35 .............................. TCGCTTCGCAAAATAGGTGCTTTAAAGATAGATTT 88741 30 100.0 36 .............................. GCTAGATAGAGGGGTTAATTCTTCTCTTAGCCAAAA 88807 30 100.0 34 .............................. ACCATTGCAACAAGTTTATTAAAATCTGCATCTG 88871 30 100.0 35 .............................. AGAAATATAAGTGGCATGAGAGATATATTAAGAGG 88936 30 100.0 33 .............................. AGAATGATAGTACTGAAAAAGGTGGTATGGCAG 88999 30 100.0 37 .............................. TTGTTTACCTTTTTTACTAAATAGTTTTTTTCTTTTT 89066 30 100.0 35 .............................. AATGAGTAGTTATGTTTGTTTTTATACTCCGTTAG 89131 30 100.0 36 .............................. CTAATTTCAAGACTACTTAACTCTTCTAAACTTACT 89197 30 100.0 36 .............................. GCATTAGAGCGAAAGAATGAAACTATTTTAACAAAA 89263 30 100.0 35 .............................. TTAGGCGATATAAGTGACTTCCTAAACTACAATAC 89328 30 100.0 35 .............................. AGCAGACTAAGTGAACTAACAAGAACCTTAGGCAT 89393 30 100.0 36 .............................. TCTGCGCTCCTTATTAAAATTATTAAATTTACGCCT 89459 30 100.0 38 .............................. TACAAGTGCCACCCATACCTAAAAAAGTAATATTTTTC 89527 30 100.0 38 .............................. ACCGTTACCTCGCCGTTAATCTTCTCAACCCCAACCTT 89595 30 100.0 35 .............................. ATTTTAAGGAGGTAAAGGTGTCAAGTCCACAAAGA 89660 30 100.0 36 .............................. TCTTATATCCTTAATATGATTTTAAATTAACAAGTA 89726 30 100.0 38 .............................. GGTAGAGCTATAGTTCTATATACCCATTTAGAATAGGT 89794 30 100.0 35 .............................. ATAGCTATCGTTGTGTATATCGACTACCTTTTTAT 89859 30 100.0 36 .............................. GATGTTGCTTCTTTGATTGTGAGTTAATATGCTTAG 89925 30 100.0 36 .............................. AAATATTCTAAATAAACATCATTTAATTTCATATCT 89991 30 100.0 35 .............................. GGTTCAATTGAATTAACAAAGGCTGTAAGAAGTGT 90056 30 100.0 36 .............................. GCTAATTCGGCTTGTGTTAAGCCTTTTTCTTCTCTT 90122 30 100.0 36 .............................. AGCTACTAATATGCTTAAAAAGGCTAGTAGATGAAT 90188 30 100.0 35 .............................. AATAAGTGAAGCAGATTTAAAGACAGGTAGACTAG 90253 30 100.0 37 .............................. CTTTCTTCTTCGTATAAGTAAAACAAAAAGCCATCTT 90320 30 100.0 35 .............................. TTTTCAAACTGCACACAAAGCAGAGGCAAATGATA 90385 30 100.0 36 .............................. CTAAATTCCTCTCCATATGAAGCCGAAATATCTTTT 90451 30 100.0 37 .............................. ATATGTTCAAATCCACCCTTGCTAACCCCACTACTAC 90518 30 100.0 36 .............................. TAAATTGCTCCGATAATCCTGTAATATTACCGTTAG 90584 30 100.0 34 .............................. TTTGGAAGCTTAAAATTAAAAATAAAATAAAGAG 90648 30 100.0 36 .............................. TAGGGAGTTTCACCTTTTCTTTACGCGTTACATAGA 90714 30 100.0 36 .............................. TGGCATATCTATGCTGTATTGCTTGAGTTTTTTTAG 90780 30 100.0 35 .............................. AAATACAAGAATAAGAAAACTATAAGTAATGGCAT 90845 30 100.0 37 .............................. CTATATAAGTGGTTTTCTATTAGCACTTTTATTTTTT 90912 30 100.0 35 .............................. AGCTTATCGCGCTGCTCTTTACTTCTTACGTTTGT 90977 30 100.0 36 .............................. CAAGCTACTAGGGCTAAAGTCTCAAACTGTCTTAGG 91043 30 100.0 33 .............................. GCGCCTTCTTCTTCTATGTCTCTCCATATCCAA 91106 30 100.0 36 .............................. ATTAATTCAACTTGCGCAACTACTTCAACACTTTTA 91172 30 100.0 35 .............................. TGTATGTGAGCATTGTCTGCTCTATCTTTCATTAG 91237 30 100.0 35 .............................. AAAGGTAAATCTAAAATTATGCATGTAGTTAAAAA 91302 30 100.0 35 .............................. TTTTTACTCCTAATTATTAGCTTTAACTCTATACT 91367 30 100.0 37 .............................. TCTGTTTTAAGATAAATATTTACTACTCCAGCTCCTG 91434 30 100.0 37 .............................. AGTAGTTCTACTTCGACTTTTAAAAGCTCTTTAAAGG 91501 30 100.0 35 .............................. CTTAGATAATAAAATGCTACCTCATAAACAATATA 91566 30 100.0 37 .............................. TCTGTTTTAAGATAAATATTTACTACTCCAGCTCCTG 91633 30 100.0 37 .............................. AGTAGTTCTACTTCGACTTTTAAAAGCTCTTTAAAGG 91700 30 100.0 35 .............................. CTTAGATAATAAAATGCTACCTCATAAACAATATA 91765 30 100.0 35 .............................. TTGCTAAACTAGCTTTGCCAACTGCGTTTGAAAGA 91830 30 100.0 35 .............................. ATAAGTTAAATAATCTAGCTAAAAAAGAGGCATTA 91895 30 100.0 36 .............................. GTTTTTCTTTATAGTTTTGATGCTGTATTACTTGTT 91961 30 100.0 35 .............................. GCTAAAGCAAAATACATTCTATTTCCATCTAATTC 92026 30 100.0 35 .............................. GCCTTTTTATTTAGTTCAACTTTCATAATTTAATG 92091 30 100.0 38 .............................. ATTTATAACGCAAACAGTGAGTTAGATGAGATTTTAAA 92159 30 100.0 36 .............................. CTTAAATAGTTTATCTTGTCGCCAAGTTCGCTCATT 92225 30 100.0 36 .............................. ATATAACTTGCTCTGCTTCATTATCTTTTTTCATAG 92291 30 100.0 35 .............................. TGTATTCCACCTGTGTTTGCATACTTATCCCAATA 92356 30 100.0 35 .............................. AGCATTAGCCCAAATGGTGAGCATATGCTAAATGA 92421 30 100.0 35 .............................. GTCATTAAAAAGCTCCAAAATCGATAATAAAGATT 92486 30 100.0 36 .............................. CTTTTAAAAGCAGTGTTAAATCTCTTTGTAAATTTA 92552 30 100.0 35 .............................. AGCTTAGTAATATCGCCAAAGTTTCTATCATCTTT 92617 30 100.0 18 .............................. TATACTCTAACATTGTCA Deletion [92665] 92665 30 100.0 38 .............................. AATCCCATAGATAAGATATCATCACCAGAATGATTACT 92733 30 100.0 36 .............................. AGCGGTAAAGATGAAAACACAGGAAGAGAAACAAGT 92799 30 100.0 36 .............................. AAGCCTTGTAATAATTAACATAGTAGTAATAGTTAA 92865 30 100.0 36 .............................. AAAGGTAAAGCAATGGCTGTTGTTGGTCTTTTGACT 92931 30 100.0 36 .............................. TAGAGTATATAAAGTATCTCATACTAGCATTCCTTG 92997 30 100.0 36 .............................. AGCAAGAGTTAGACCTAATACAATAATTATAAAAGC 93063 30 100.0 36 .............................. ATCCCATCAAGGTGGGGAATCAAGTAGTTTTTATGT 93129 30 100.0 36 .............................. CTTTCTTCTTCGTATAAATAAAACAAGAAGCCATCT 93195 30 100.0 36 .............................. CGGTTTTGCTTAAACAATCTCACATTTATATCATCT 93261 30 100.0 36 .............................. TTTATTATTTCTAAGAATTGTTTTAATTCTTTTAAA 93327 30 100.0 37 .............................. ATGGTTTCTGGACTTAACAGCTCTAATTTTTTAGCCA 93394 30 100.0 35 .............................. AAGAAATTACCAAATGCGGGTATGATTGCAGCTGG 93459 30 100.0 35 .............................. CCATATCTGGCACAACCAGCAATAAAGATAGAAAG 93524 30 100.0 35 .............................. ATCCATTCGCCACTATTTATATCAACACCAGATGA 93589 30 100.0 35 .............................. AGTCTTAGTTTATTTAATATTCTTTCTAACATAGC 93654 30 96.7 37 .....A........................ AGCCTATCAAAACATCGATGATTTAAGAACAGCATTA 93721 30 100.0 35 .............................. GCCGGATACTCGCTTCTAATTACTTCTAAATATCC 93786 30 100.0 37 .............................. ACAGTTGTATAATCATCCTTATTTATATCAGAACTAG 93853 30 100.0 36 .............................. AAAGTTATACCAAGAGCATTAGTTATTTCTATGCTA 93919 30 100.0 37 .............................. ACAAAATAGAGTAGCTAAAACTCAAAATGAGACTTTA 93986 30 100.0 37 .............................. TTATTTTAAGCAATATATAAGTATACAGATAGTATAA 94053 30 100.0 34 .............................. TTTAAATTGTGTTTTTTATCAATTTTTGTAAAGT 94117 30 96.7 36 ............T................. CAAGTTATGAAACCATCTTTAAAAAGGTTTGTAACC 94183 30 100.0 37 .............................. TAAATACCCCTCAACAATACTGCTAAATACCAATAAC 94250 30 100.0 35 .............................. TCTTTAAAGTTAGTTACATCTAGCTTTTTAAGCTT 94315 30 100.0 36 .............................. CGCGCTGGCGGTCAATGTTTTTTAGCGCCCTGCCTG 94381 30 100.0 36 .............................. AGTGTAAAAGATTTTTTATAATCAACCTTGATGGTA 94447 30 100.0 36 .............................. TATTATGCTTATACGTTCTCATAGTTGCATATCTCT 94513 30 100.0 36 .............................. ATAAACTCATCTTTTAGCTCCCTATATACATCTCTT 94579 30 100.0 35 .............................. GATTTAAAGAATGTATGCAAGCTATTTGGAGTAGA 94644 30 100.0 36 .............................. ATGCTGCATTGAGAATAAAGCATATTTAAGAAGAGC 94710 30 100.0 36 .............................. TATCATATATGTAATATTTTTGTTCTTGTTCTGATA 94776 30 100.0 36 .............................. CTATTTTATGTCTCTTTGCGGAATACTTACAGGCTT 94842 30 100.0 35 .............................. TCATTACATACTCAAGCTTTTTATCGTTATTTGAG 94907 30 100.0 36 .............................. TAATAACCCAGTCGCCAGAACTTAGACATGGATACA 94973 30 100.0 36 .............................. ACTTATGTATGGATGTCGTATAGTTGCTATTGAGAC 95039 30 100.0 36 .............................. AAGAGATTATAGGAATTTTAAGTTTGTAGATAATGA 95105 30 100.0 35 .............................. CTTATAACAAGGCTAAAACACTCGCTAAGAGCTAC 95170 30 100.0 36 .............................. ACAAATAAATTTCGAAGCAATATTTATAGGAGGAGA 95236 30 100.0 36 .............................. ATTCTAAATACTAGTATATCTTCTTGAGTATCAATG 95302 30 100.0 37 .............................. TTCTTAGGTTTAAGCTTTCCATAACGTATATCATAAA 95369 30 100.0 36 .............................. AGCACATAACTTTTACTATCGCTTTTGCTAACTCCA 95435 30 100.0 35 .............................. AAGTACTAGATTTAACAACGAAATTTTAAAGGAAG 95500 30 100.0 36 .............................. TATTTCTGCATTGCCATATACTATAGAATTATCAAA 95566 30 100.0 36 .............................. AAGCTATGGTGTACTTTCTTCAAGTGATGTTTTTGC 95632 30 100.0 37 .............................. TGGTATGGAAATCCAAGCACTGCTTCTAAACACTCTA 95699 30 100.0 36 .............................. TTATCTTCTACTTCTATACCTTCAATATCTGAGCTA 95765 30 100.0 36 .............................. TTGCTAAAAAAATAGCAAACAAAGCCGTAATTGGCA 95831 30 100.0 36 .............................. AATAATATGTTTGAGCCGCCAGTATCCAACCCTATA 95897 30 100.0 36 .............................. TTTCGAGTTAATCCATCTTTAAAAGTGGATAAGAAA 95963 30 100.0 37 .............................. AACCAAAATTTTAAACCTTGCAGTTTTGGATAGATTA 96030 30 100.0 35 .............................. GTATAAATCCAAACTATAAGAGCAATAATAGAAGC 96095 30 100.0 35 .............................. TCTAGTTTGGTTGTTAATTTATCATATGGAGTATT 96160 30 100.0 36 .............................. AATAATATGTTTGAGCTAGATGAAGAAACGTATGAG 96226 30 100.0 36 .............................. GTTTTTCTTTATAGTTTTGGTGCTGTATTACTTGTT 96292 30 100.0 36 .............................. GAGTTTGGCATAATGTTAAGAACTGGTGGCTTGATA 96358 30 100.0 37 .............................. TAGGCTTAAAATTTCCAGTACTATATTCAACTCCTAG 96425 30 100.0 36 .............................. TCTGTTATTTGTTTGTAGCCCAAGAAGTCATTTTCT 96491 30 100.0 35 .............................. ACTCTATTTCATTGTCTAGTTTTTCACTTTCCACA 96556 30 100.0 36 .............................. TTTTAGTTACAACGAGATTATGGGGCTAGAAAAGGC 96622 30 100.0 35 .............................. TTGATAGCAATATTGAAGTTATAAACTCTTTTAGA 96687 30 100.0 36 .............................. TTTTTATGCAAAAATAGTGTAAAAAAGGACAGAAAG 96753 30 100.0 35 .............................. AGACTTGCATTTACATTAAATAACCTTAATGTTTT 96818 30 100.0 36 .............................. CGCTTTATATGCATAGCGAATATTAGTTTTGGTATG 96884 30 100.0 35 .............................. GTAGCAAAGCAAACAAGGTATAAAGAGCAAGTACT 96949 30 100.0 36 .............................. AGAAATTTCTCATTACTTTGAGTCTTTGTATAAGTT 97015 30 100.0 37 .............................. TCACAAATATATGGCTCCATGCTATCGCCTACAGCAC 97082 30 100.0 35 .............................. AAAAATCCATTATCTCTTTATAAGGCACTGAGTCT 97147 30 100.0 37 .............................. GTCAAAAAATCTGCCAAATAAATCCATCCAAAAGTCA 97214 30 100.0 36 .............................. GCTGGCATTTTATTAAAATTAGTCACAAAATCTTTT 97280 30 100.0 36 .............................. TAGTGTTTATAAACCAAATTATCCAGCCTATCGCCA 97346 30 100.0 35 .............................. ACAAACAGAAGATACCCTAATAATCTCTACTCTAT 97411 30 100.0 36 .............................. AACTTTATCAAATTTGGTTTGAGCAATTAGAGCCAA 97477 30 100.0 35 .............................. TAAATACAGGGTTTATACTCAATAGGTAATTCATT 97542 30 100.0 37 .............................. TTTTTCTATGTTCTGTCGGCTCTTTTGGGTATAGGAC 97609 30 100.0 35 .............................. TTCTTTATCATCTACCATTTTTCTATGTTCTGTCG 97674 30 100.0 35 .............................. AGAATAACCTTTATCTTTTACTATTTTCATAAAGT 97739 30 100.0 36 .............................. ATAATTAATGCTCCAATTCCAGTAGAAATTAATGCA 97805 30 100.0 36 .............................. TCAGCTAATCTAGCTAATGCCTCTTTTTTAGCTAGA 97871 30 100.0 37 .............................. AGAGAGCAAAGAAAAGGCTAAGGAGCAAGAGCTTCCC 97938 30 100.0 35 .............................. AACTTTACCACAAGCCCCACTACCAACACAACCTT 98003 30 100.0 36 .............................. GTATATGTTACAGCGGCTTTGATATAGTATCTATCG 98069 30 93.3 0 .....C..................C..... | ========== ====== ====== ====== ============================== ======================================= ================== 158 30 99.9 36 ATTTTGCTTGAACAAATTTTGTATTGAAAC # Left flank : ACAAAGGTTTTTAAGGTGTGTAAGAAGTATTTTTTACATCATCAAAAATCAGTTTTTAAAGGCGAGATTACACCATCGAATTTTATAAAATTTAAAGCCGAAATAGAAAAAATAATAGATAAAAATATCGATTTTGTTAGCATAATACGACTTGTAAGACAAAGCGATGTGGATGAAATTAGCATAGGTGGAATGGCTTTTGATAAAAATGATATGTTTTTGTAACTTTTGTAATTTTATTCTTAATTTTGCTTAAAATTTCTTTTGTTTTATAATTTATTTTTATACTTTTTTAGTTAAATTTCAAAAAAAGATTGCTTAAGATTTTTCCAACTGAATTTTTGATAAAATATCTATAAAGGTCTATAATTCGAACCTTTGAGCTCTTTAACTTGTCATTGTTAAAAATTTAAATAAAGGCTGGAAAAATTATCATTATCTCTCCTAATTTTGGTAGTTTTATGGTATTTTGATGTTTTTAGGATATAATAATTATCGTT # Right flank : CGATATAAAAACCATAAAAACAAAAACACAAAACCAACCGCCACTTCGCAAAATCATCTTGTTAATATAACTTTAATCTTTTATCGCTAAAATTTACAATTATTTTTATTTAAGGAGATTTATGTATCTATTTACTTCTGAAGTTGTAAGTCCGGGTCACCCAGATAAATGCGCTGATATTATCGCTGATAGCATAGTTGATGCGGTTTTGATGGAGGATAAGGATGCTAGAGTGGCGAGTGAGGTCTTTGTCGCAGGCAAGCATATCGTCATTGGCGGCGAGGTAAAAACAAATGCAGAATTTAGTTTTAAAAGGTTTGAGGCCATCGTAAAAGAGGCTCTTAGACACATAGGATACAACGGAAACCCAAATTTTACAAAAGAGCAATGTTTGCATCCAGATGACATCGAAGTTCATGTGCTTTTAAACAAGCAAAGTTCAGATATCAACCAAGGCGTTGATCAAGATGATGGCGAGATAGGAGCAGGAGATCAAGGCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGCTTGAACAAATTTTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //