Array 1 2584495-2584323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021850.1 Pseudoclostridium thermosuccinogenes strain DSM 5807 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 2584494 32 100.0 41 ................................ GGTTCAAAAACATCAGAGAAGCAGATGATATACATGCTGTA 2584421 32 100.0 35 ................................ ATAAATGGACTTCTATAAAAACCGGGAACTCTATC 2584354 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================= ================== 3 32 100.0 38 GTCGCACCCTGCACGGGTGCGTGGATTGAAAC # Left flank : ATATCCACCATTTTTGATAAAGTAGAGGTGGTTTGCATGATGGTATTGATCACATACGATGTTGACACTACCACTTATGGAGGACAAAGACGTTTATATAAGGTTGCCAAAACATGTGTGAACTATGGACAAAGAGTGCAGGAATCTGTTTTTGAATGTGTGCTAGAACCTCATCAGTATATAGAGCTGAAAGCGAAACTTGAGAAACTGATGGATATTGAGAGAGACAGCATAAGGTTCTACAATCTGGGGAGCAATTGGAAACGTCGTGTGGAGCATCTTGGTGCGAAAAAACCTTATGATCCGGAAGGTGTTATAATCACTTGAGTTTTCCGCGGAACCCAAGTGAACATGTTTTTGCGGGGAAGTCGCGGAAGTCTGATTTTCAAAGGTTTCAGAGTCTTTTGCTAATTTTTTGAAAAGAGATTTTGCATCATTTTTTAAGATCCGCGGAAATATTGCATAGAAGTGCTGATATACCTGCTTTTGAATATAGTGCA # Right flank : GTAGCTGATACCAAAGCTACGGCTTTGTCAATGAGTTGCATCTCGTAAAAGGTGCATAAATTTAAAATGTTGACAGCGTGAATATAATTGATTAGAATACATCGCAATCCCTATGGAATGTTGACTGAAATGTTATATAATGCAAATATAGAAACATGGGGAGAAGGTAAGCGATGAGCAAGGTATATGAATTTGAAGCTGAGATTAAAAAAGTGCCGGATATTGATGGTGCATATATTGAGATCCCCTTTGATGTGAAGGCTAAATTTGGCAAAGGGCGGGTATCTGTTACTGCAACCTTTGATGGCGAAGTATATCATGGCATGCTTGTGAGAATGAAAACACCATGCCACATAATAGGCATACGGAAAGATATCAGGGCGAAAATAAACAAGCAGCCAGGAGACAAGGTTTTTGTAACTATCAGGGAAAGAGAAGTCAAAAAATAGGAGGAAGTTTATTGGAAAGGAAAAGTCTGTTTCAGTGCCCTGTGTGCAAAA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4336869-4336640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021850.1 Pseudoclostridium thermosuccinogenes strain DSM 5807 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4336868 30 100.0 37 .............................. ATGAAGATATTTCTGAGGATGTGATATAAATGGCAAT 4336801 30 100.0 36 .............................. GCGTAAACACTTTCGGGAAGGACACATAGCTTAACC 4336735 30 100.0 36 .............................. TCATCATTTTTGTAAATATCTGCATCGATACAGTGG 4336669 30 93.3 0 ...........G....A............. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 98.3 37 GCTTTAATCGTACCATGTTGGAATTGAAAC # Left flank : GCCATTGTTAGCATCCTTTCCGTACCCCCTTAGCATTGACAACTAAAGGGTACTATTTTTAATTGGGTGCTGGCAATGTTTTTTTCTTCTATCAAAATCATGAATAGCTAAATATGCCTGCCGTTGACGATAGAAATCAACCGCAGTGAAAGTTGTATTAATATTTACTGTAAAATATTCTCAAATTTGTTTGGCAAGCTGCTGCACTTTTACGTGGCAACTTGCTGTACTTTTATTTTACAATACACAAAAATAACCCAATCGGACTCAGTTAGAATTTTTATGTCTCGGAAAAAAGATGGCTTTCAAAAGGCGTTATAGGCAGAGAAAAAATCCCAACTGATAACTTTATTCAAAACTTATGAAGAATATGGTACAATTGCTATTATAGAGGGAATGAAATCATGAAGGTACAGTGTTTTTTGCACGACTGGAGGTTCATTGCAAAAATAAGTGTTTTCGACACCGGAATGCCTTGAAATATGCGCATTTCCGTCGGT # Right flank : ATCATAGTATCTGTTGAAACGTCAATTAATTCAGAAGGCTTTACTCTTACCACATTGTAATAAAGCATTTAATACTCATTTCCTGTTTTAAAGTCCTATTATCCTTGATATCAGCCATTTTACACCTTTGCAAATCATGGTTAACATCTGAAATATTTCGCACCCTTTAATACCCTATGTAATATATTGGTGGTGAAGGATAAACTCTTGAGGCTGAGCTGGTTGCTGTATAGTGAAATTCGGCTCATGTTCGTCAATTGTTTGCAGGAGGTGTTTGCGCTGGAATACATAGTTGAAATCAACGGCCTTGGAATGAAGTACCAGTCTTTGAACGGCGAAATCAATGCAATTGAAAATATCGACCTATCCGTAAAAAAGGGTGAGTTTATCAGCATTGTCGGCCCCAGCGGGTGCGGCAAATCTACGCTCTTGTCAATAATATGCGGGCTTCTTACGCCCACATCCGGACATGTACTGATAAACGGCAAGAGTCTGAGGGG # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAATCGTACCATGTTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 4340298-4339806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021850.1 Pseudoclostridium thermosuccinogenes strain DSM 5807 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4340297 30 100.0 37 .............................. TTTGATTTTTCTTTTCTATTATTTCTTATATCCGATA 4340230 30 100.0 36 .............................. CCTAACCACCCTGAAAGTTAACACAGGGTTACTATT 4340164 30 100.0 37 .............................. CAAGAAGCCACATCATCAGTAATTACCCTGCCCAACC 4340097 30 100.0 35 .............................. TTGTTAATCTTATGCTTGGACTGTGTGCCGGAATC 4340032 30 100.0 35 .............................. CTGTATATCAAGAAGAAAAGCAATTGTTGGATATA 4339967 30 100.0 35 .............................. CTTGTCGTCGTGCGTTCCTCTCTCGTGTGTTCAAG 4339902 30 100.0 37 .............................. TAACTTTTGATAACTCAATGGGTATCCTTTCTCCATC 4339835 30 86.7 0 ..........................CGTT | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.3 36 GTTTTAATCGTACCAAGTTGGAATTGAAAG # Left flank : AACTATAAAATGGTGAAAGCTAATAAAAACTATACTTTATACGAAAGATCATGCTAAGTATGCATCCTTGGTCTGGTCCTGTTGCTGGGAGACTTTTGACTATAAAGTACTCTCAGCTATATTTTTATTATATTGTGTTGAATCATGAGCCATATAGAATTTTACTGAAAATTTCTTTATAACAAGATATATACCAATGGAAAACACATGGAAAGTACAGGTATTCATTGTATGAATTATATATAATTATCTACAACATCCTGATAAAGACTCAGTGATTATTTTCGTGTTCCGTAAAAGGAATTGCTTTGAAATGTATTAAGGGGATAGAAAAACACAACTGACATTTTATTTAAACCTCATGAAGAATATGGTACAATTACTATTATAGAGGAAATAAAATCATGAAGGTACAGTGTTTTTTACACGACTGGAGGTTCACTGCAAAAATAAGTGTTTTCGACGCCGAAATGCCTTGATATATGTGGATTCCCGCCGGT # Right flank : CGATATGGTCCAACCAGTTTATGGAGATAGGATATCCTACAGCAATGGCTGTTTTTGAAATAGATTTACTGAGAGTTCGGTAGGTCTTTATTCGCTCGTATATAGTTGCATTACTGATATGGTAGCAATGCAAAATAACTGTGTTTTGTCAACTAGAAATGCATCAAAATGACAAGAAAAATGCAGCACCCAAGCAATCCAATTTTGTTAATATAAGGTATGAATTTTTATCGTACTTTCATCAAGGAGTTCTCTAAACGATTACTTGAACCTTCAAATACAATTAAGTGGCTGTGATGAATAATTCTATCAATGATTGCGCTTGTTAGCTTTTCATCGTAGAAAATACTGTTCCATTTACTGAATTCTAAATTAGTAGTAATAATTAGACTTTTGCGTTCGTAACAGTCTGATATAACCTGAAATAAAAGTTGCGCTCCCTCTTTTTCAAATGGAATGAAACCCCATTCATCGCAAATAATCAAATCTGCCTTATTCAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGTACCAAGTTGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 4349237-4348688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021850.1 Pseudoclostridium thermosuccinogenes strain DSM 5807 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4349236 30 100.0 36 .............................. ATGGAAATAGTTGCTGAGGGTGAATTAGTAGAATTG 4349170 30 100.0 36 .............................. CTTTAAGTTAAAGTAAAAGTTTTATCTTATAATCTC 4349104 30 100.0 37 .............................. ATGAAGATAAATAAAGATGGTGAGGTTAAAAGACATA 4349037 30 100.0 37 .............................. TCAACGACAAGCTTAATTACGTCATTAAAATATGCTT 4348970 30 83.3 38 .C.......T.....TA.........C... AAAAAATAAGCCCGGATAATCCGGGCTATTTTTACAAA 4348902 29 80.0 36 ......CA-......T.C..A......... ATACCTATGCACACAACATAAAATATGATAAAATAA 4348837 30 86.7 24 A...............A......C.....T TATTTTAATTATTAACTATGTATT Deletion [4348784] 4348783 30 86.7 36 ..........A....TA........A.... CTTATTTTATCATATCTTTTAAAGTTATTTTCTTTC 4348717 30 80.0 0 ...C.....A.......A....G.C....T | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 90.7 35 GTTTTAATCGTACCAAGTTGGAATTGAAAC # Left flank : ATAGGACGCTTATCAGACTGGAACTTTATAAGCTTATAAAACATCTGACCGGGGATCAGAGTTATGAAGGATTTAAAATGTGGTGGTAAGATATGTATGCATTGATTGTCTATGATGTTAAAGAGAAAAGAGTTGCGAAAGTATTGAAATTCTTACGTTCCTACCTCAATTGGATACAGAATTCGGTATTTGAAGGGGAAGTAACAGAAGCTCAAATGCTGAAGATAAAAAACCACCTTAGGGAGATTATCGATGAAGATGAGGATTCGGTGATAATTTTCACATCTAGGGAAAAAAGGTGGCTTTCGAAAAGCATTATGGGGAGAGAAAAGAACTCGACTGACAATTTTATTTAAATACCATGAAGAATATGGTACAATTGTTATCCAAGAGGAAATAAAATCATGAGGGTACGGTGTTTTTTGCACGACTGGAAGTTCATTGCAAAAATAAGTGTTTTTGACGCCGGAACGCCTTGATATATGTGTATTCCCGTCGGT # Right flank : ATATGTTTTGAGGGAATACTATAGGAAATTTATTTTTATACCGTATTATAATTATTAACTCATAAAATAAAGAATAAAGAAGGGAAAATGAGGAAATATAGAAATAATAAACCATAATGACTTATAAAAGCGGTTGGATGAAGTTACTGCGGTTTGATGGACACAGAACATGGCTGGTATAATAAAACCAGAACATATGGAGGTGTCCATCAATGAAACGCTTTGATAAAAATTTTAAGATTGAAGCTGTGCGCCTAATTTTAGAACAGGGATGCAGTGCTTCAAGTGTAGCAAAAGAACTTGATATCCATGAGAATACAGTTCGCAGATGGGTAAGAGAATGCAAAGTGCATAGTGATGATACGTTCCATGACAGTAGTAACTTAAAACCTCAAGATGAGGAACTGAGACAACTTAAAAAGCGCATTGCTGACCTTGAGAAGGAAAATGTCATTCTAAAAAAAGCCACTGCAATCTTCGCAAGATGCCAGAAGTAGCCT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:0, 3:3, 4:0.54, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGTACCAAGTTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //